View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_high_6 (Length: 530)
Name: NF2697_high_6
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 19917474 - 19916975
Alignment:
| Q |
18 |
ggaatcaattaactctataatattgtttaattaaacctcaagatctttgccnnnnnnncaaaatggaggtacacatactaaagaaactatgaaactaatt |
117 |
Q |
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| T |
19917474 |
ggaatcaattaactctataatattgtttaattaaacctcaagatctttgccaaaaaaacaaaatggaggtacacatactaaagaaactatgaaactaatt |
19917375 |
T |
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| Q |
118 |
aacatattccttctcttcaacaatgaatatattacaaagccctatagttgaagggactcccatcatcacaaaaagggagcagcagaagggttaacaacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19917374 |
aacatattccttctcttcaacaatgaatatattacacagccctatagttgaagggactcccatcatcacaaaaagggagcagcagaagggttaacaacaa |
19917275 |
T |
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| Q |
218 |
tatgtctaagagggtgtgcaacatctccacccccagcatgcttaacaaactcagctggagacagaaagtttccatggcacacacacattatcctcacttc |
317 |
Q |
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| T |
19917274 |
tatgtctaagagggtgtgcaacatctccaccaccagcatgcttaacaaactcagctggagacagaaagtttccatggcacacacacattatcctcacttc |
19917175 |
T |
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| Q |
318 |
ttcccctttgccatatttgtacaagattccctcaattcgtcttccattaggaccatccccttttgtaaatacacaaggcatgtcttccactgaatttgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19917174 |
ttcccctttgccatatttgtacaagattccctcaattcttcttccgttaggaccatccccttttgtaaatacacaaggcatgtcttccactgaatttgtt |
19917075 |
T |
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| Q |
418 |
ccaatctccttcccaatattttgggtttgatagggtctcttagatgcattttccattacctcggttcttgaagttgttcttgtcaaattctcatttgtct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19917074 |
ccaatctccttcccaatattttgggtttgatagggtctcttagatgcattttccattacctcggttcttgaagttgttcttgtcaaattctcatttgtct |
19916975 |
T |
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