View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_low_11 (Length: 490)
Name: NF2697_low_11
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 8707893 - 8707426
Alignment:
| Q |
1 |
ctaattacttatagttagaatcgctaatcagttaaattacacttgaggtatggtgcttcatttaataactgcaactgcctcatctgttagtaaattcaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8707893 |
ctaattacttatagttagaatcgctaatcagttaaattacacttgaggcatggtgcttcatttaataactgcaactgcctcatctgttagtaaattcaaa |
8707794 |
T |
|
| Q |
101 |
attcactcgggtgagtcaactcactaccaacactgatcggtctcccatttgcgacttgagtagccggaagacaccatcgtcgacaacggccgtcgttgtt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8707793 |
attcactcggatgagtcaactcactaccaacactgatcggtctcccatttgcgacttgagtagccggaagacaccatcgtcgacaacggccgtcgttgtt |
8707694 |
T |
|
| Q |
201 |
gccggaaaagactcctatcataattagcacgtttatcaggatccgaaagcgtggaatatgcagagtgaatcttcatgaaatcatccgccgatgagttttt |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8707693 |
gccggaaaagactccgatcataattagcacgtttatctggatccgaaagcgtcgaatatgcagagtgaatcttcatgaaatcatccgccgatgagttttt |
8707594 |
T |
|
| Q |
301 |
ccgatcaatcgccgcaacatcagggtggcagactcttgcaagtcgccggtaggccgccttgatttcttgattcgaagcacctgctgatataccgaggatc |
400 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8707593 |
ccgatcaatcgccgccacatcagggtggcagactcttgcaagtcgccggtaggccgccttgatttcttgattcgaagcacctgctgatataccgaggatc |
8707494 |
T |
|
| Q |
401 |
tcatagtgtgatccaggagaagagtgagaaaaagagttcatgtttaaatacgaaggtctgtgctgctc |
468 |
Q |
| |
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| T |
8707493 |
tcatagtgtgatccaggagaagagtaagaaaaagagttcatgtttaaatacgaaggtctttgttgctc |
8707426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 114 - 459
Target Start/End: Complemental strand, 8696077 - 8695732
Alignment:
| Q |
114 |
agtcaactcactaccaacactgatcggtctcccatttgcgacttgagtagccggaagacaccatcgtcgacaacggccgtcgttgttgccggaaaagact |
213 |
Q |
| |
|
|||||| | |||||||||||||||| || |||||||| ||||||||||| || |||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
8696077 |
agtcaatttactaccaacactgatccgtttcccattttcgacttgagtatccagaagacaccatcgttgacaacggccgtagttgttgccggaaaagact |
8695978 |
T |
|
| Q |
214 |
cctatcataattagcacgtttatcaggatccgaaagcgtggaatatgcagagtgaatcttcatgaaatcatccgccgatgagtttttccgatcaatcgcc |
313 |
Q |
| |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8695977 |
ccgatcataattagcacgtttatctggatccgaaagcgtggaatatgcagagtgaatcttcatgaaatcatccgccgatgagtttttccgatcaattgcc |
8695878 |
T |
|
| Q |
314 |
gcaacatcagggtggcagactcttgcaagtcgccggtaggccgccttgatttcttgattcgaagcacctgctgatataccgaggatctcatagtgtgatc |
413 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||| || ||||| |
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| T |
8695877 |
gcaacatcaggatggcagactcttgcaagtcgccggtatgccgcctttatttcttgattggaagcacctgctgatataccgagaatctggtaaagtgatg |
8695778 |
T |
|
| Q |
414 |
caggagaagagtgagaaaaagagttcatgtttaaatacgaaggtct |
459 |
Q |
| |
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| ||||||||||||||| ||||||||||||| | ||| |||||||| |
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| T |
8695777 |
ctggagaagagtgagaagaagagttcatgttaagataggaaggtct |
8695732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 102 - 459
Target Start/End: Complemental strand, 8727215 - 8726852
Alignment:
| Q |
102 |
ttcactcgggtgagtcaactcactaccaacactgatcggtctcccatttgcgacttgagtagccggaagacaccatcgtcga------caacggccgtcg |
195 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||| ||||||||||| |||| |||||| |||||||| | |||| ||| |||||||||| | |
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| T |
8727215 |
ttcattcgggtgagtcaactcattaccaacattgatcagtctcccatttccgacctgagtaaccggaagatattatcgccgatgacgacaacggccgttg |
8727116 |
T |
|
| Q |
196 |
ttgttgccggaaaagactcctatcataattagcacgtttatcaggatccgaaagcgtggaatatgcagagtgaatcttcatgaaatcatccgccgatgag |
295 |
Q |
| |
|
| | | |||||||||||| ||||||||||||||||||||||||||| || || || || || ||| ||||| |||||||||||||| ||||| ||| |
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|
| T |
8727115 |
tcgccggaggaaaagactccgatcataattagcacgtttatcaggatctgagagtgtagagtaagcaacctgaattttcatgaaatcatctgccgacgag |
8727016 |
T |
|
| Q |
296 |
tttttccgatcaatcgccgcaacatcagggtggcagactcttgcaagtcgccggtaggccgccttgatttcttgattcgaagcacctgctgatataccga |
395 |
Q |
| |
|
||||||||||||| || ||| || ||||||||||||| |||||||||||||||||| || |||||||||||||| || || ||| ||||||||||||||| |
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| T |
8727015 |
tttttccgatcaaccgacgccacgtcagggtggcagagtcttgcaagtcgccggtacgctgccttgatttcttggttggaggcagctgctgatataccga |
8726916 |
T |
|
| Q |
396 |
ggatctcatagtgtgatccaggagaagagtgagaaaaagagttcatgtttaaatacgaaggtct |
459 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||| |
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|
| T |
8726915 |
ggatgtcatagtgcgatccaggagaagagtgagaaaaggagctcatatttaaatacgaaggtct |
8726852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 360
Target Start/End: Complemental strand, 32039845 - 32039682
Alignment:
| Q |
197 |
tgttgccggaaaagactcctatcataattagcacgtttatcaggatccgaaagcgtggaatatgcagagtgaatcttcatgaaatcatccgccgatgagt |
296 |
Q |
| |
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||||||||||| | || |||||||| |||| || || ||||||||| |||| |||||||| |||| |||||||||||||| ||||||||||| || |
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| T |
32039845 |
tgttgccggaacaagcttctatcatagctagctcgcttctcaggatccaaaagagtggaatacgcagcatgaatcttcatgaactcatccgccgaagaaa |
32039746 |
T |
|
| Q |
297 |
ttttccgatcaatcgccgcaacatcagggtggcagactcttgcaagtcgccggtaggccgcctt |
360 |
Q |
| |
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|||||||||| |||||| |||||||||||| | || || |||||||| |||||||||||||| |
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| T |
32039745 |
ccttccgatcaaccgccgccacatcagggtgggaaaccctggcaagtcgtcggtaggccgcctt |
32039682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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