View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2697_low_14 (Length: 436)
Name: NF2697_low_14
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 48673978 - 48674387
Alignment:
| Q |
1 |
tctcgaaaaaccggaggttaacaccaaaaaagattaatacattcctatgatttaaaagacgaatttgaatattaatttcatttttcattaaagaaaatta |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48673978 |
tctcgagaaaccggaggttaacaccaaaaaagattaatacattcctataatttaaaagaccaatttgaatattaatttcatttttcattaaagaaaatta |
48674077 |
T |
|
| Q |
101 |
tgatactcttgaatggttaacaaggtccaccactacctgataattgatgttgagaattatataatctagaccaatttcaataattcaatagattgtgtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48674078 |
tgatactcttgaatggttaacaaggtccaccactacctgataattgatgttgagaattatataatctagaccaatttcaataattcaatagattgtgtct |
48674177 |
T |
|
| Q |
201 |
ggcaaccagtaagattcctcggttgcaatggaaaggcttgtatggatcatcagcagtgcctgtgtcgttgtagaagcattgcattaagaaagagaaaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48674178 |
ggcaaccagtaagattcctcggttgcaatggaaaggcttgtatggatcatcagcagtgcctgtgtcgttgtagaagcattgcattaagaaagagaaaatt |
48674277 |
T |
|
| Q |
301 |
cattatctctctcttaaattcaacagcttttagtgagttgtactgttgatgaaaaaatggctgaagaagattacatgccacaaagaaaagagaaaatgct |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48674278 |
cattatctctctctt-aattcaacagcttttagtga---acactgttgatgaaaaaatggctgaagaagattacatgccacaaagaaaagagaaaatgct |
48674373 |
T |
|
| Q |
401 |
gagatttgttacca |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48674374 |
gagatttgttacca |
48674387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University