View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_low_18 (Length: 406)
Name: NF2697_low_18
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 8242877 - 8243255
Alignment:
| Q |
18 |
ttaagcttataataagttctataaatatgcaaaatatgagttagactcttttgcaacaaaatacacataacttataaattaaattgttgaatccaagatg |
117 |
Q |
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| T |
8242877 |
ttaagcttataataagttctataaatatgcaaaatatgagttagactcttttgcaacaaaatacacataacttataaattaaattgttgaatccaagatg |
8242976 |
T |
|
| Q |
118 |
tgtgtatgttaatatagttgnnnnnnnnnnnnnnnnnaaattgtactatcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaa |
217 |
Q |
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| T |
8242977 |
tgtgtatgttaatatagttgttttttcttttcattttaaattgtactatcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaa |
8243076 |
T |
|
| Q |
218 |
atctccagcctagtgaattggccactggcgttaactttgcatccggtggtgcaggatatgatcctttaacagcaaaattagaggtatacatatttttaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8243077 |
atctccagcctagtgaattggccactggcgttaactttgcatccggtggtgcaggatatgatcctttaacagcaaaattagaggtatacatatttttaga |
8243176 |
T |
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| Q |
318 |
atatattatcaatttggttttgaatattacc-nnnnnnnnagtttggtctccgaatataagtctctaaactactttcat |
395 |
Q |
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| T |
8243177 |
atatattatcaatttggttttgaatattacctttttttttagtttggtctccgaatataagtctctaaactactttcat |
8243255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 155 - 320
Target Start/End: Original strand, 8252879 - 8253044
Alignment:
| Q |
155 |
aaattgtactatcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaaatctccagcctagtgaattggccactggcgttaactt |
254 |
Q |
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| T |
8252879 |
aaattgtactatcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaaatcttcagcctagtgaattggttacaggcgttaactt |
8252978 |
T |
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| Q |
255 |
tgcatccggtggtgcaggatatgatcctttaacagcaaaattagaggtatacatatttttagaata |
320 |
Q |
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| T |
8252979 |
tgcgtccggtggtgcaggatatgatcctttgacatcaaaaatagaggtatatatattttcagaata |
8253044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 166 - 284
Target Start/End: Original strand, 8232686 - 8232804
Alignment:
| Q |
166 |
tcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaaatctccagcctagtgaattggccactggcgttaactttgcatccggtg |
265 |
Q |
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| T |
8232686 |
tcagttgaagaattaggcattaaagaatttctaccagcatacttggatccaaatctccagcccagtgatttatctactggtgtgtgttttgcatccggtg |
8232785 |
T |
|
| Q |
266 |
gtgcaggatatgatccttt |
284 |
Q |
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|||| |||| ||||||||| |
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| T |
8232786 |
gtgctggatttgatccttt |
8232804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 297
Target Start/End: Original strand, 8270859 - 8270990
Alignment:
| Q |
166 |
tcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaaatctccagcctagtgaattggccactggcgttaactttgcatccggtg |
265 |
Q |
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|||||||||||||||||||||||||||| |||||| | || |||||||| || ||||| |||||||||||| ||||||| || ||||||||| |||| |
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| T |
8270859 |
tcagttgaagaattaggcattaaagaatttctacccccttacttggatcctaagctccaacctagtgaattgaccactggtgtgtgctttgcatctggtg |
8270958 |
T |
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| Q |
266 |
gtgcaggatatgatcctttaacagcaaaatta |
297 |
Q |
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| T |
8270959 |
gcgctggatatgatgatttgacatcaaaatta |
8270990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 53276266 - 53276383
Alignment:
| Q |
164 |
tatcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaaatctccagcctagtgaattggccactggcgttaactttgcatccgg |
263 |
Q |
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|||||||||||| ||| |||||||| |||| ||| || || ||||||||||||||| |||| ||||| || | | ||| || ||| |||||||||||| |
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| T |
53276266 |
tatcagttgaagcattgggcattaaggaatttctgccggcgtatttggatccaaatatccaacctagcgatctcgtcacgggtgtttgctttgcatccgg |
53276365 |
T |
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| Q |
264 |
tggtgcaggatatgatcc |
281 |
Q |
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| T |
53276366 |
tggttctgggtatgatcc |
53276383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 53296436 - 53296492
Alignment:
| Q |
166 |
tcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaaatctc |
222 |
Q |
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| T |
53296436 |
tcagttgaagagttaggtattaaagagcttttaccagcttatttggatccaaatctc |
53296492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 11839048 - 11838984
Alignment:
| Q |
166 |
tcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaaatctccagcctag |
230 |
Q |
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|||||||||| ||| |||||||| |||| ||| || || ||||||||||||||| |||| ||||| |
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| T |
11839048 |
tcagttgaagcattgggcattaaggaatttctgccggcgtatttggatccaaatatccaacctag |
11838984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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