View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_low_19 (Length: 406)
Name: NF2697_low_19
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 48592361 - 48592742
Alignment:
| Q |
1 |
gaaccatggcacaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48592361 |
gaaccatggcacaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggcagaagaaagtgtgaacctcac |
48592460 |
T |
|
| Q |
101 |
acaagctttgataaagctttccaacaacataatatcacggatgatgttgagtattgattgttcaggaacagataaccaagcagaacaagtaagggctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
48592461 |
acaagctttgataaagctttccaacaacataatatcacggatgatgttgagtattgattgctcaggaacagataaccaagcagaacaagttagggctttg |
48592560 |
T |
|
| Q |
201 |
gttcgcgaggtaacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttgg |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592561 |
gttcgcgaggtaacacagatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttgg |
48592660 |
T |
|
| Q |
301 |
acatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaataga |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592661 |
acatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaataga |
48592742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 48602056 - 48602437
Alignment:
| Q |
1 |
gaaccatggcacaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48602056 |
gaaccatggcacaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggcagaagaaagtgtgaacctcac |
48602155 |
T |
|
| Q |
101 |
acaagctttgataaagctttccaacaacataatatcacggatgatgttgagtattgattgttcaggaacagataaccaagcagaacaagtaagggctttg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
48602156 |
acaagctttgataaagctttccaacaacataatatcacggatgatgttgagtattgattgctcaggaacagataaccaagcagaacaagttagggctttg |
48602255 |
T |
|
| Q |
201 |
gttcgcgaggtaacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttgg |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48602256 |
gttcgcgaggtaacacagatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttgg |
48602355 |
T |
|
| Q |
301 |
acatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaataga |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48602356 |
acatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaataga |
48602437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 12 - 382
Target Start/End: Complemental strand, 23231960 - 23231590
Alignment:
| Q |
12 |
caatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttga |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||| ||||||| ||||||||||||||||||||| |
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| T |
23231960 |
caattcctaccgattcgaacccaagaactcgatgaattcattcaaacattgacaaataaatctaaggccagagaaagtttgaacctcacacaagctttga |
23231861 |
T |
|
| Q |
112 |
taaagctttccaacaacataatatcacggatgatgttgagtattgattgttcaggaacagataaccaagcagaacaagtaagggctttggttcgcgaggt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23231860 |
taaagctttccaacaacataatatcacggatgatgttgagtattgattgctcaggaacagataaccaagcagaacaagttagggctttggttcgcgaggt |
23231761 |
T |
|
| Q |
212 |
aacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttggacatacacaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23231760 |
aacacaaatttttggagaatttaatgtttcggattttataggatttttcaagaactttgacttgcaaggttttaaaaaaagggccttggacatacacaag |
23231661 |
T |
|
| Q |
312 |
aggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaataga |
382 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23231660 |
aggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaataga |
23231590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 23224620 - 23224265
Alignment:
| Q |
19 |
taccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttgataaagct |
118 |
Q |
| |
|
|||| |||||||| | ||||||| | || |||||||||||||||| |||||| || ||||| |||||||| ||||||||||| ||||||||| | ||||| |
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|
| T |
23224620 |
taccaattcgaactcgagaactcaacgagttcattcaaactttggaaaataaatccaaggttgaagaaagcgtgaacctcactcaagctttgttgaagct |
23224521 |
T |
|
| Q |
119 |
ttccaacaacataatatcacggatgatgttgagtattgattgttcaggaacagataaccaagcagaacaagtaagggctttggttcgcgaggtaacacaa |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| | |||||||| |||| || || ||||| | ||| | |||||||| || || || ||| |
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|
| T |
23224520 |
ttccaacaacataatatcacggatgatgttgagcattgagagctcaggaacggatagtcaggctgaacaggcgaggacgttggttcgagatgtgacccaa |
23224421 |
T |
|
| Q |
219 |
atttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggccttggacatacacaaaaggtatg |
318 |
Q |
| |
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||||| || |||||||| |||| |||||||||||| ||| ||||||||| ||||| |||||| | ||||||||||| ||||| ||||| || ||||||| |
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| T |
23224420 |
attttcggggaatttaacatttcggattttataggattttgcaagaacttggactttcaaggtctcaaaaagagggcattggatatacataagaggtatg |
23224321 |
T |
|
| Q |
319 |
atgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaag |
374 |
Q |
| |
|
||||||| |||| ||| | |||| ||||||||| ||| | ||||| |||||||| |
|
|
| T |
23224320 |
atgcttttctggagaagttaatttgtgatcgtgaggaatcacgaaggaaagccaag |
23224265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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