View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_low_20 (Length: 404)
Name: NF2697_low_20
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 43051913 - 43051540
Alignment:
| Q |
16 |
aacaactcgaaaatattgacaacatgagacttaaatacaacctcaataatatgaatactagaaatttgtgtgcgaaattgaataatttaccttcttccca |
115 |
Q |
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| T |
43051913 |
aacaactcgaaaatattggcaacatgagacttaaatacaacctcaataatatgaatactagaaatttgtgtgcgaaattgaataatttaccttcttccca |
43051814 |
T |
|
| Q |
116 |
cggatgacagcaccagactctccttggatgaccatgtatttgactcctgcaaggtgcaagcccgtaggagcaagatgaccaggttcgtcaaaatctttca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051813 |
cggatgacagcaccagactctccttggatgaccatgtatttgactcctgcaaggtgcaagcccgtaggagcaagatgaccaggttcgtcaaaatctttca |
43051714 |
T |
|
| Q |
216 |
taatatcagtgttctcttgaggcttaatctgaaaaataatcataaataaaaattgattagagcaatttcacttgatcataatagtaatatgtgcacctcc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051713 |
taatatcagtgttctcttgaggcttaatctgaaaaataatcataaataaaaattgattagagcaatttcacttgatcataatagtaatatgtgcacctcc |
43051614 |
T |
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| Q |
316 |
taatcaaaatctaatcttcaaatacgcaatgaatgaccaagaatagtttcatgtgggaatgtaatgatgaatat |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051613 |
taatcaaaatctaatcttcaaatacgcaatgaatgaccaagaatagtttcatgtgggaatgtaatgatgaatat |
43051540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 102 - 251
Target Start/End: Original strand, 34173060 - 34173209
Alignment:
| Q |
102 |
ttaccttcttcccacggatgacagcaccagactctccttggatgaccatgtatttgactcctgcaaggtgcaagcccgtaggagcaagatgaccaggttc |
201 |
Q |
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|||||||||||||||| |||||||| |||| ||||||||| || |||||||| |||| | | ||||||||| ||| ||||| |||||||| || ||||| |
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| T |
34173060 |
ttaccttcttcccacgaatgacagctccaggctctccttgaataaccatgtacttgatttccccaaggtgcatgccagtaggtgcaagatgtcctggttc |
34173159 |
T |
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| Q |
202 |
gtcaaaatctttcataatatcagtgttctcttgaggcttaatctgaaaaa |
251 |
Q |
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||| ||||||||||| ||| |||| |||| | |||||||| ||| |||| |
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| T |
34173160 |
gtcgaaatctttcatgataccagtaatctcatcaggcttaaactgtaaaa |
34173209 |
T |
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