View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2697_low_23 (Length: 389)
Name: NF2697_low_23
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 1501797 - 1501441
Alignment:
| Q |
20 |
atatctaatttttataaacaatgttgaattgtctttcaaataagcgactctaagaatcaaac--gtannnnnnnnn-agaacatttatttttctagaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
1501797 |
atatctaatttttataaacaatgttgaattatctttcaaataagcgactctaagaatcaaactcgtattctttttttagaacatttatttttctagaaaa |
1501698 |
T |
|
| Q |
117 |
tttatc---------aaaataataccaaactcaaaagtagagaataagccaaaggaatatgagaagaagnnnnnnngagtatgaaaggaacccataagga |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
1501697 |
tttatccaattcatcaaaataataccaaactcaaaagtagagaataagccaaatgaatatgagaacaa----aaaagagtatgaaaggaacccataagga |
1501602 |
T |
|
| Q |
208 |
aaagtactttaaaattgccaataagtaagagattcactacatttacacaactagtcaaccaatcaatctactacatgcattgagaaaatgcataaatcaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1501601 |
aaagtactttaaaattgccaataagtaagagattcactacatttacacaactagtcaaccaatcaatctactacatgcattgagaaaatgcataaatcaa |
1501502 |
T |
|
| Q |
308 |
acagctagctgttgttgattttgatgggaagattcatcttcattcaagcataaatgagcct |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1501501 |
acagctagctgttgttgattttgatgggaagattcatcttcattcaagcataaatgagcct |
1501441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 30933454 - 30933509
Alignment:
| Q |
304 |
tcaaacagctagctgttgttgattttgatgggaagattcatcttcattcaagcata |
359 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
30933454 |
tcaaacagctaattgttgttgcttttgatgtgaagattcatcttcattgaagcata |
30933509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University