View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_low_25 (Length: 378)
Name: NF2697_low_25
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 113 - 268
Target Start/End: Original strand, 10581941 - 10582095
Alignment:
| Q |
113 |
ttatactaactcaaaacaacttgttgctacatctagacctctccttgcagagagattttgtattcttcaatcgaaggacttgatctactaaaatatgcat |
212 |
Q |
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| T |
10581941 |
ttatactaactcaaaacaaatttttgctacatctagacctctccttgcagagagattttgcattcttcactcaaaggacttgatctactaaaatatgtat |
10582040 |
T |
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| Q |
213 |
tcttca-tctagtcttcttaataaattctgaatattcatcaatatttatcttagaac |
268 |
Q |
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| T |
10582041 |
tcttcgctct-gtct-cttcaagcactgtgaatattcatcaatatttatcttagaac |
10582095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10581830 - 10581869
Alignment:
| Q |
1 |
tatcaaagatttctcattccctaaaaatgtttgattaaag |
40 |
Q |
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| T |
10581830 |
tatcaaagatttctcattccctaaaaatgtctgtttaaag |
10581869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 10582430 - 10582464
Alignment:
| Q |
312 |
atggatgttcaacataaccatttcattgtaactta |
346 |
Q |
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| T |
10582430 |
atggatgttcaacataaccatctcattgtaactta |
10582464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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