View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2697_low_3 (Length: 599)

Name: NF2697_low_3
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2697_low_3
NF2697_low_3
[»] chr5 (1 HSPs)
chr5 (1-587)||(31903675-31904267)
[»] chr2 (2 HSPs)
chr2 (199-318)||(4982573-4982692)
chr2 (157-358)||(4956586-4956787)
[»] chr8 (1 HSPs)
chr8 (274-358)||(35828115-35828199)
[»] chr7 (1 HSPs)
chr7 (90-130)||(27043275-27043315)


Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 31903675 - 31904267
Alignment:
Q  1 tccccattattaaccttcttctcaaattcaaaaccctcctcataaaacttcacctctttatacccttttctaaaccaaggatccctcaaaatctcatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31903675 tccccattattaaccttcttctcaaattcaaaaccctcctcataaaacttcacctctttatacccttttctaaaccaaggatccctcaaaatctcatcaa 31903774  T
Q  101 cagttatcctcgtctccggatttgtatccatcaaccgcgataaaaaccgctttagatccggtgaaaaccaccgcggacacttaaattccccgctatatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31903775 cagttatcctcgtctccggatttgtatccatcaaccgcgataaaaaccgctttagatccggtgaaaaccaccgcggacacttaaattccccactatatat 31903874  T
Q  201 cttcctatacatcaccatcaaatttggatcattaaatggtagataaccagccacaagaacaaacagggtaataccacatgaccaaatatccaccttagct 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  31903875 cttcctatacatcaccatcaaatttggatcattaaatggaagataaccagccacaagaacaaacagtataataccacatgaccaaatatccaccttagct 31903974  T
Q  301 ccatcataacctctcttcgctaaaatctccggtgccacatatgcaggtgttccacaaagcgtgtgtaacatcccgtcaattcgaacttgctctttcactg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31903975 ccatcataacctctcttcgctaaaatctccggtgccacatatgcaggtgttccacaaagcgtgtgtaacatcccgtcaattcgaacttgctctttcactg 31904074  T
Q  401 cactcaatccaaaatccgaaaccttcaaattcccctgcaattcattacaaaatccataacagaataacactaattagtttcataaatcattacaaaattg 500  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31904075 cactcaatccaaaatccgaaaccttcaaattcccctacaattcattgcaaaatccataacagaataacagtaattagtttcataaatcattacaaaattg 31904174  T
Q  501 caattagttacagaac------caaaatcaaaatcattcgctaatacaattgtatcaataccttatcatctagtagcagattttcaggtttca 587  Q
    ||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31904175 caattagttacagaaccaaaatcaaaatcaaaatcattcgctaatacaattgtatcaataccttatcatctagtaacagattttcaggtttca 31904267  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 199 - 318
Target Start/End: Complemental strand, 4982692 - 4982573
Alignment:
Q  199 atcttcctatacatcaccatcaaatttggatcattaaatggtagataaccagccacaagaacaaacagggtaataccacatgaccaaatatccaccttag 298  Q
    |||||| |||||||| |||| ||||||  |||||| || || ||| |||| ||||  |||||||| ||  ||| |||||| |||||||||||  |||| |    
T  4982692 atcttcttatacatctccattaaatttctatcattgaaaggaagaaaacctgccaatagaacaaagagaataacaccacaagaccaaatatctgccttgg 4982593  T
Q  299 ctccatcataacctctcttc 318  Q
    |||||||||||||| |||||    
T  4982592 ctccatcataacctttcttc 4982573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 358
Target Start/End: Original strand, 4956586 - 4956787
Alignment:
Q  157 tccggtgaaaaccaccgcggacacttaaattccccgctatatatcttcctatacatcaccatcaaatttggatcattaaatggtagataaccagccacaa 256  Q
    ||||||||||||||||  ||||||  ||| || ||  | || |||||| |||||||  |||| | |||| |||||| ||| |||| |||||||||||  |    
T  4956586 tccggtgaaaaccacctgggacaccgaaactcacccttgtaaatcttcttatacattgccataacattttgatcatgaaaaggtaaataaccagccatca 4956685  T
Q  257 gaacaaacagggtaataccacatgaccaaatatccaccttagctccatcataacctctcttcgctaaaatctccggtgccacatatgcaggtgttccaca 356  Q
     ||||||||    || |||||| ||||||| ||| ||||| || |||||||||||| || | || |||| ||| ||||| ||||| ||||| || |||||    
T  4956686 aaacaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccaca 4956785  T
Q  357 aa 358  Q
    ||    
T  4956786 aa 4956787  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 358
Target Start/End: Complemental strand, 35828199 - 35828115
Alignment:
Q  274 ccacatgaccaaatatccaccttagctccatcataacctctcttcgctaaaatctccggtgccacatatgcaggtgttccacaaa 358  Q
    ||||| ||||||||||| |||||||| |||||||||||| || | |  |||| ||| || || ||||| |||||||| |||||||    
T  35828199 ccacaagaccaaatatcaaccttagcaccatcataacctttcctagacaaaacctcaggagcaacataagcaggtgtaccacaaa 35828115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 27043275 - 27043315
Alignment:
Q  90 aatctcatcaacagttatcctcgtctccggatttgtatcca 130  Q
    ||||||||||||| ||||||||||||  |||||||||||||    
T  27043275 aatctcatcaacacttatcctcgtcttgggatttgtatcca 27043315  T

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