View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2697_low_30 (Length: 345)

Name: NF2697_low_30
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2697_low_30
NF2697_low_30
[»] chr7 (4 HSPs)
chr7 (17-345)||(31311884-31312213)
chr7 (36-83)||(34732568-34732615)
chr7 (102-167)||(39760229-39760294)
chr7 (125-170)||(786240-786285)
[»] chr1 (2 HSPs)
chr1 (101-179)||(23802596-23802674)
chr1 (124-170)||(6886605-6886651)
[»] chr2 (7 HSPs)
chr2 (99-173)||(16389463-16389537)
chr2 (101-170)||(8083816-8083885)
chr2 (100-161)||(11814072-11814133)
chr2 (124-173)||(32484062-32484111)
chr2 (101-173)||(1001374-1001446)
chr2 (111-165)||(14433839-14433893)
chr2 (124-169)||(8686901-8686946)
[»] chr4 (5 HSPs)
chr4 (101-174)||(12141773-12141846)
chr4 (36-83)||(37214216-37214263)
chr4 (104-174)||(45036764-45036834)
chr4 (44-82)||(48418870-48418908)
chr4 (36-80)||(30551598-30551642)
[»] chr5 (1 HSPs)
chr5 (101-157)||(7471453-7471509)
[»] scaffold0017 (1 HSPs)
scaffold0017 (42-76)||(35997-36031)
[»] chr8 (2 HSPs)
chr8 (116-170)||(23431730-23431784)
chr8 (34-82)||(1409407-1409455)
[»] chr3 (3 HSPs)
chr3 (124-174)||(39493284-39493334)
chr3 (111-152)||(8167458-8167499)
chr3 (124-157)||(47190203-47190236)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 31311884 - 31312213
Alignment:
Q  17 acaattaacttacactgctttaaacaatattcaactaattctaacaaa--tttcaaactatctctaacaaaaatcaaacattttcacctgtctctcgaga 114  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31311884 acaattaacttatactgttttaaacaatattcaactaattctaacaaaaatttcaaactatctctaacaaaaatcaaacattttcacctgtctctcgaga 31311983  T
Q  115 ggtcacatagttgagagtttctctcttcaacctcgagagactcagtttgagacccggcacacagaaaaatcaaacattttctaggccatcacctccaaac 214  Q
    | |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31311984 g-tcacatggttgagagtttctctcttcaacctcgagagactcggtttgagacccgacacacagaaaaatcaaacattttctaggccatcacctccaaac 31312082  T
Q  215 tcactatgaccaactagtggagccaattctttgttacaacaacaacaagaaacatcctcaacctcaaaaccatagtgactaacccataaaactgcatgca 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31312083 tcactatgaccaactagtggagccaattctttgttacaacaacaacaagaaacatcctcaacctcaaaaacatagtgactaacccataaaactgcatgca 31312182  T
Q  315 ccaaaaccaaaggcacagcacaagctaaagt 345  Q
    |||||||||||||||||||||||||||||||    
T  31312183 ccaaaaccaaaggcacagcacaagctaaagt 31312213  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 34732615 - 34732568
Alignment:
Q  36 ttaaacaatattcaactaattctaacaaatttcaaactatctctaaca 83  Q
    |||||||||||||||||||||||||||||| || |||||  |||||||    
T  34732615 ttaaacaatattcaactaattctaacaaatctccaactacatctaaca 34732568  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 39760294 - 39760229
Alignment:
Q  102 ctgtctctcgagaggtcacatag-ttgagagtttctctcttcaacctcgagagactcagtttgagac 167  Q
    ||||||| ||||||||||| | | ||||||||| |||||||||||||||||  ||||||||||||||    
T  39760294 ctgtctcccgagaggtcacttgggttgagagtt-ctctcttcaacctcgaggtactcagtttgagac 39760229  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 786240 - 786285
Alignment:
Q  125 ttgagagtttctctcttcaacctcgagagactcagtttgagacccg 170  Q
    ||||||||||| ||||||||||| |||| |||| ||||||||||||    
T  786240 ttgagagtttccctcttcaaccttgagaaactcggtttgagacccg 786285  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 23802674 - 23802596
Alignment:
Q  101 cctgtctctcgagaggtcacatagttgagagtttctctcttcaacctcgagagactcagtttgagacccggcacacaga 179  Q
    |||||||| ||||| ||||| | ||||||||||||||||||||||||||||| |||| ||| |||||||||||| ||||    
T  23802674 cctgtctcccgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggttcgagacccggcacccaga 23802596  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 6886605 - 6886651
Alignment:
Q  124 gttgagagtttctctcttcaacctcgagagactcagtttgagacccg 170  Q
    ||||| ||||||||||||||||||||||| |||| |||||| |||||    
T  6886605 gttgaaagtttctctcttcaacctcgagaaactcggtttgaaacccg 6886651  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 16389463 - 16389537
Alignment:
Q  99 cacctgtctctcgagaggtcacatagttgagagtttctctcttcaacctcgagagactcagtttgagacccggca 173  Q
    |||||||||| ||||| ||||| | ||||| ||||||||||||||||| ||||| |||| |||||||||||||||    
T  16389463 cacctgtctcccgagaagtcacttggttgatagtttctctcttcaaccccgagaaactcggtttgagacccggca 16389537  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 8083885 - 8083816
Alignment:
Q  101 cctgtctctcgagaggtcacatagttgagagtttctctcttcaacctcgagagactcagtttgagacccg 170  Q
    |||| ||| ||||| ||||| |||||||||||||||||||| ||||| |||| |||| ||||||||||||    
T  8083885 cctgcctcccgagaagtcacgtagttgagagtttctctctttaaccttgagaaactcggtttgagacccg 8083816  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 11814133 - 11814072
Alignment:
Q  100 acctgtctctcgagaggtcacatagttgagagtttctctcttcaacctcgagagactcagtt 161  Q
    |||| |||| ||||||||||  | ||||||||||||||||||||||||||||| ||||||||    
T  11814133 acctatctcacgagaggtcatttggttgagagtttctctcttcaacctcgagaaactcagtt 11814072  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 32484111 - 32484062
Alignment:
Q  124 gttgagagtttctctcttcaacctcgagagactcagtttgagacccggca 173  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  32484111 gttgagagtttctctcttcaacctcgagaaactcggtttgagacctggca 32484062  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 1001374 - 1001446
Alignment:
Q  101 cctgtctctcgagaggtcacatagttgagagtttctctcttcaacctcgagagactcagtttgagacccggca 173  Q
    |||||||  ||| ||||||| | ||||||| ||||||||||||||||||||| |||| ||| |||||||||||    
T  1001374 cctgtcttccgaaaggtcacttggttgagaatttctctcttcaacctcgagaaactcggttcgagacccggca 1001446  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 14433839 - 14433893
Alignment:
Q  111 gagaggtcacatagttgagagtttctctcttcaacctcgagagactcagtttgag 165  Q
    |||| ||||| | ||||||||||||||||||||||||||||| |||| |||||||    
T  14433839 gagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggtttgag 14433893  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 8686946 - 8686901
Alignment:
Q  124 gttgagagtttctctcttcaacctcgagagactcagtttgagaccc 169  Q
    |||||||||||||||||||| |||||||| |||| ||| |||||||    
T  8686946 gttgagagtttctctcttcatcctcgagaaactcggttcgagaccc 8686901  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 12141846 - 12141773
Alignment:
Q  101 cctgtctctcgagaggtcacatagttgagagtttctctcttcaacctcgagagactcagtttgagacccggcac 174  Q
    |||||||| ||||| || || | ||||||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  12141846 cctgtctcccgagaagttacttggttgagagtatctctcttcaacctcgagaaactcggtttgagacccggcac 12141773  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 37214263 - 37214216
Alignment:
Q  36 ttaaacaatattcaactaattctaacaaatttcaaactatctctaaca 83  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  37214263 ttaaacaatatccaactaattctaacaaatatcaaactatctctaaca 37214216  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 45036834 - 45036764
Alignment:
Q  104 gtctctcgagaggtcacatagttgagagtttctctcttcaacctcgagagactcagtttgagacccggcac 174  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||| | || |||| ||| |||||| |||||    
T  45036834 gtctcccgagaagtcacatggttgagagtttctctcttcaaccttgtgaaactcggttcgagacctggcac 45036764  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 48418908 - 48418870
Alignment:
Q  44 tattcaactaattctaacaaatttcaaactatctctaac 82  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  48418908 tattcaactaattctaacaaatctcaaactatctgtaac 48418870  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 30551598 - 30551642
Alignment:
Q  36 ttaaacaatattcaactaattctaacaaatttcaaactatctcta 80  Q
    ||||||||||||||| ||||| |||||||| ||||||||| ||||    
T  30551598 ttaaacaatattcaaataattttaacaaatctcaaactatatcta 30551642  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 7471453 - 7471509
Alignment:
Q  101 cctgtctctcgagaggtcacatagttgagagtttctctcttcaacctcgagagactc 157  Q
    |||||||| | ||||||||| | ||||||||||||| ||||||||||||||| ||||    
T  7471453 cctgtctcccaagaggtcacttggttgagagtttctttcttcaacctcgagaaactc 7471509  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 36031 - 35997
Alignment:
Q  42 aatattcaactaattctaacaaatttcaaactatc 76  Q
    |||||||||||||||||||||||| ||||||||||    
T  36031 aatattcaactaattctaacaaatctcaaactatc 35997  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 23431730 - 23431784
Alignment:
Q  116 gtcacatagttgagagtttctctcttcaacctcgagagactcagtttgagacccg 170  Q
    ||||| ||||||| |||||||||||||||| || ||| |||| ||||||||||||    
T  23431730 gtcacttagttgaaagtttctctcttcaacttctagaaactcggtttgagacccg 23431784  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 1409455 - 1409407
Alignment:
Q  34 ctttaaacaatattcaactaattctaacaaatttcaaactatctctaac 82  Q
    ||||||||||| || || |||||||||||||| |||||| |||||||||    
T  1409455 ctttaaacaatgttaaaataattctaacaaatctcaaaccatctctaac 1409407  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 39493334 - 39493284
Alignment:
Q  124 gttgagagtttctctcttcaacctcgagagactcagtttgagacccggcac 174  Q
    ||||||| ||| |||||||| | |||||| |||||||||||||||||||||    
T  39493334 gttgagattttttctcttcagcttcgagaaactcagtttgagacccggcac 39493284  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 8167458 - 8167499
Alignment:
Q  111 gagaggtcacatagttgagagtttctctcttcaacctcgaga 152  Q
    |||||||||| | |||||||| ||||||||||||||||||||    
T  8167458 gagaggtcacttggttgagagattctctcttcaacctcgaga 8167499  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 47190203 - 47190236
Alignment:
Q  124 gttgagagtttctctcttcaacctcgagagactc 157  Q
    ||||||||||||||||||||||||||||| ||||    
T  47190203 gttgagagtttctctcttcaacctcgagaaactc 47190236  T

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