View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2697_low_31 (Length: 344)
Name: NF2697_low_31
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 24832441 - 24832703
Alignment:
| Q |
11 |
aacctgtggaattaagaaatataagtagtgagcgcacatttcagacacaacgcagcaaaactatctaacattcagtatacctatctgtacgagtcgttga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
24832441 |
aacctgtggaattaagaaatataagtagtgagcgcacatttcagacacaacgcagcaaaactatctaacattcagtatatctatctgtacgagttgttga |
24832540 |
T |
|
| Q |
111 |
ggcctaaattttcactcggcctctatgaacgtagccttacactcagctccgccttgatcttgtcgaaactacaacaataacgatatattaaattactagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24832541 |
ggcctaaattttcactcggcctctatgaacgtagccttacactcagctccgccttgatcttgtcgaaactacaacaataacgatatattaaattactagt |
24832640 |
T |
|
| Q |
211 |
aaagttagccttcagtaataaaatttcaacaagtactagccccagtaatataataaactcaga |
273 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24832641 |
aaagttagccttcagtaatgaaatttcaacaagtacaagccccagtaatataataaactcaga |
24832703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 51557005 - 51556910
Alignment:
| Q |
91 |
ctatctgtacgagtcgttgaggcctaaattttcactcggcctctatgaacgtagccttacactcagctccgccttgatcttgtcgaaactacaaca |
186 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||| |||||| |||||| || |||| |||| |||| |||| ||||||||| || | |||||||||| |
|
|
| T |
51557005 |
ctatctgtaagagtcgctgaggcctaaatgttccctcggcatctatgtacatagctttaccctcacctcctccttgatctagtggcaactacaaca |
51556910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 328
Target Start/End: Original strand, 24832770 - 24832799
Alignment:
| Q |
299 |
caagaattcaaagcttatcatgtacgaaac |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24832770 |
caagaattcaaagcttatcatgtacgaaac |
24832799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University