View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_low_34 (Length: 311)
Name: NF2697_low_34
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 14102739 - 14102428
Alignment:
| Q |
1 |
ataacatatctcatccttaacatcataaaaagttcacattaatttgtttagtatttttgattttaaattccacgtatgttattaggcacatctcaata-- |
98 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14102739 |
ataacacatctcatccttaacatcataaaaagctcacattaatttgtttagtattt--gattttaaattccacgtatgttattaggcacatctcaatacc |
14102642 |
T |
|
| Q |
99 |
-------------------tgtcaaactcaattttaattaaatcagttttttaacaccaatttcattcaaaattaattatattgtcaaacactcatctaa |
179 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14102641 |
aaaacgccaaatataaatatgtcaaactcaattttaagtaaatcagttttttaacaccaatttcattcaaaattaattatattgtcaaacactcatctaa |
14102542 |
T |
|
| Q |
180 |
tcacatatactcaaactattctctaacaacaatcacataacacaaaagaaaatgttgagattcatctatttctcttgcaaattaaaaccaaaattaaaac |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14102541 |
tcacatatactcaaactattctctaacaacaatcacataacacaaaagaaaatgttgagattcatctatttctcttgcaaattaaaaccaaaattaaaac |
14102442 |
T |
|
| Q |
280 |
atgaactttaccat |
293 |
Q |
| |
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|||||||||||||| |
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| T |
14102441 |
atgaactttaccat |
14102428 |
T |
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