View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_low_36 (Length: 298)
Name: NF2697_low_36
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 16399556 - 16399324
Alignment:
| Q |
15 |
agaagaattagagcataaacgatggaatgtcaattagaaagaatgattgttcacaaatacaaatcatttttcctttgtacaaacataaaaataactataa |
114 |
Q |
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| T |
16399556 |
agaaaaattagagcataaatgatggaatgtcaattagaaagaatgattgttcacaaatacaaatcatttttcctttgtataaacataa---taactataa |
16399460 |
T |
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| Q |
115 |
aatttccattacatgtataaattattatttt-gtacaaacataagacataactataaaatttcgattacatgtaaaagtcccatgcattaagtgtttaga |
213 |
Q |
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||||||||||| |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
16399459 |
aatttccattaaatgtataaattattttttttgtacaaacataagacataactacaaaatttcgattacatgtaaaagtctcatgcattaagtctttaga |
16399360 |
T |
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| Q |
214 |
aaaatacaaactgaaataagatgacaaatggactat |
249 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
16399359 |
aaaatacaaactgaaataagatgacaaatggactat |
16399324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 30886620 - 30886849
Alignment:
| Q |
20 |
aattagagcataaacgatggaatgtcaattagaaagaatgattgttcacaaatacaaatcatttttcctttgtacaaacataaaaataactataaaattt |
119 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30886620 |
aattagagcataaaccatgaaatgtcaattagaaagaatgattgttcacaaatacagatcatttttcctttgtacaaacataagaataactataaaattt |
30886719 |
T |
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| Q |
120 |
ccattacatgtataaattattattttgtacaaacataagacataactataaaatttcgattacatgtaaaagtcccatgcattaagtgtttagaaaaata |
219 |
Q |
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| T |
30886720 |
ctattacatgtatattttttttttctgtacaaacataatacataactacaaaatttcgattacatgtaaaagtcccatgcattaagtgtttagaaaaata |
30886819 |
T |
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| Q |
220 |
caaactgaaataagatgacaaatggactat |
249 |
Q |
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| T |
30886820 |
caaactgaaataagatgacaaatggactat |
30886849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 12524277 - 12524322
Alignment:
| Q |
145 |
tgtacaaacataagacataactataaaatttcgattacatgtaaaa |
190 |
Q |
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| T |
12524277 |
tgtacaaacatacatcataactataaaatttctattacatgtaaaa |
12524322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 26 - 279
Target Start/End: Original strand, 22848809 - 22849058
Alignment:
| Q |
26 |
agcataaacgatggaatgtcaattagaaagaatgattgttcacaaatacaaatcatttttcctttgtacaaacataaaaataactataaaatttccatta |
125 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
22848809 |
agcataaaccatgaaatgtcaattagaaagaatgattgttcacaaatacaaatcatttttcctttgtacaaacataagaataactataaaatttctatta |
22848908 |
T |
|
| Q |
126 |
catgtataaattattattt-tgtacaaacataagacataactataaaatttcgattacatgtaaaagtcccatgcattaagtgtttagaaaaatacaaac |
224 |
Q |
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|||||||| || || ||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22848909 |
catgtatatatatttttttctgtacaaacataatacataactacaaaatttcaattacatgtaaaagtcccatgcattaagtgtttagaaaaatacaaac |
22849008 |
T |
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| Q |
225 |
tgaaataagatgacaaatggactataaacacatgtacagtagaaattcaattaca |
279 |
Q |
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| T |
22849009 |
tgaaataagatgacaaatggactatcaa-ac----acagtagaaattcaattaca |
22849058 |
T |
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