View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2697_low_39 (Length: 286)
Name: NF2697_low_39
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 2243130 - 2242866
Alignment:
| Q |
1 |
aaacagaaaaaggttaaaggaatttatgaagtacatagatagaaacnnnnnnnnaatattttctctgaactttcatccttcaaagtctaaggattgctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2243130 |
aaacagaaaaaggttaaaggaatttatgaagtacatagatagaaactttttttaaatattttctctgaactttcatccttcaaagtctaaggattgctaa |
2243031 |
T |
|
| Q |
101 |
gttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactgtcatttggaatcacatcttggcatacaaaccaaacaccaaaaatttcat |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2243030 |
gttatttcaacttatctagagaaaagtaacatgattgcaatttcttcactgtcatttggaatcacatcttggcatacaaaccaaacaccaaaaatttcat |
2242931 |
T |
|
| Q |
201 |
cctttgccaatccccttcaccaaattccaactcccattactgcgccaaccattgtatgtgttgcc |
265 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2242930 |
cccttgccaatccccttcaccaaattccaactcccattactgcgccaaccattgtatgtgttgcc |
2242866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 31780332 - 31780117
Alignment:
| Q |
7 |
aaaaaggttaaaggaatttatgaagtacatagatagaaacnnnnnnnnaatattttctctgaactttcatccttcaaagtctaaggattgctaag----t |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
31780332 |
aaaaaggttaaaggaatttatgaagtacatacatagaaactttttttaaatattttctctgaactttcatccttcaaagtctaaggattgccaagttatt |
31780233 |
T |
|
| Q |
103 |
tatttcaacttatccagagaaaagtaacatgattgcaatttcttcactg------tcatttggaatcaca-tcttggcatacaaaccaaacaccaaaaat |
195 |
Q |
| |
|
|||||| ||||| | |||| ||||||||||| | |||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
31780232 |
tatttccacttacctagag-aaagtaacatgtctacaatttcttcactgtgtcattaatttggaatcacagtcttcacatacaaaccaaacaccaaaaat |
31780134 |
T |
|
| Q |
196 |
ttcatcctttgccaatc |
212 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
31780133 |
ttcatcccttgccaatc |
31780117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 59 - 213
Target Start/End: Complemental strand, 29057292 - 29057137
Alignment:
| Q |
59 |
ttttctctgaactttcatccttcaaagtctaaggattgctaagttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactgtcatttg |
158 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||||| ||||||||| ||| | || | || |
|
|
| T |
29057292 |
ttttctctgaattttcatccttcaaagtctaacgattgctaaattatttcaacttagctacagaaaagtaacatgtctgcaatttcatcagtctcttctg |
29057193 |
T |
|
| Q |
159 |
gaatcaca-tcttggcatacaaaccaaacaccaaaaatttcatcctttgccaatcc |
213 |
Q |
| |
|
||||||| |||| |||| ||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
29057192 |
caatcacagtcttcacatagaaatcaaacaccaaaaatttcatcccttgccaatcc |
29057137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University