View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_low_4 (Length: 599)
Name: NF2697_low_4
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Original strand, 2243123 - 2243716
Alignment:
| Q |
1 |
ttctgtttttccttatctgtgcttaaaatcctctgacccaatggcccgtaagtagtgctgagtttatgggggagaaccgcgattcggtccctgcatatca |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2243123 |
ttctgtttttccttatttgtgcttaaaatcctctgacccaatggcccgtaagtagtgctgagtttatgggggagaaccgcgattcggtccctgcatatca |
2243222 |
T |
|
| Q |
101 |
catttttaagacaagtgaagagctttgagatgtgacctaagcacccatgcagagattagtctcataaaaggtctaaagaaccaaagtttgtaggaatact |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2243223 |
catttttaagacaagggaagagctttgagatgtgacctaagcacccatgcagagattagtctcataaaaggtctaaagaaccaaagtttgtaggaatact |
2243322 |
T |
|
| Q |
201 |
ctatagagacacttggctaccaaatgccccaattaccacgatttcatnnnnnnnnnggttcactggtgaaacatttttcagtaatagagaagggagtatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
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| T |
2243323 |
ctatagagacacttggctaccaaatgccccaattaccacgatttcataaaaaaaaagct-cactggtgaaacatttttcagtaatagagaagggagtatc |
2243421 |
T |
|
| Q |
301 |
aagcaacataaagtttttctctttttgaacaaagcaacataaagttatttattatattcaataattttttgggtgtctagaccaagtattatatacttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
2243422 |
aagcaacataaagtttttctctttttgaacaaagcaacataaagttatttattatattcaataatttttttggtgtctagaccaaatattatatacttta |
2243521 |
T |
|
| Q |
401 |
atttaacatggtgaacctttggtttctgaaatttagacaatggagcaatagaatctaaacagataatgctcttcaaaaatggaccccttgtaaaagttta |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2243522 |
atttaacatggtgaacctttggtttctgaaatttagacaatggagcaatagaatctaaacagataatgctcttaaaaaatggaccccttgtaaaagttta |
2243621 |
T |
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| Q |
501 |
gatagttaatctcatgaaattatcttataggcatacatataagataattgttccacatcatgcaaaattatttcaaacatatgagccttcatgca |
595 |
Q |
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| T |
2243622 |
gatagttaatctcatgaaattatcttataggcatacatataagataattgttccacatcatgcaaaattatttcaaacatatgagccttcatgca |
2243716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 548 - 594
Target Start/End: Original strand, 31780416 - 31780462
Alignment:
| Q |
548 |
ttgttccacatcatgcaaaattatttcaaacatatgagccttcatgc |
594 |
Q |
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| T |
31780416 |
ttgttccacatcatgcaagatcatttcaaacatatgagccttcatgc |
31780462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 446
Target Start/End: Original strand, 29057430 - 29057477
Alignment:
| Q |
399 |
taatttaacatggtgaacctttggtttctgaaatttagacaatggagc |
446 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||| |||||| |
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| T |
29057430 |
taatttaacatggtgaacctttggtttttgagatttagacagtggagc |
29057477 |
T |
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