View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_low_40 (Length: 285)
Name: NF2697_low_40
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 8458630 - 8458881
Alignment:
| Q |
17 |
tataattaaatactgacacacatttgatactatagcacatggaaaaatctttgatttcagatagaatttcttctttttgttattgtaatacaagaggaat |
116 |
Q |
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| T |
8458630 |
tataattaaatactgacacacatttgatactatagcacatggaaaaatctttgatttcagatagaatttcttctttttgttattgtaatacaagaggaat |
8458729 |
T |
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| Q |
117 |
ttcagcaagaaacaaggtgcagaagattcagctgaccaaattttccattccaaggcttcctaatagatctttggtggcagaattgaattatgtaaataat |
216 |
Q |
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| T |
8458730 |
ttcagcaagaaacaaggtgcagaagattcagctgaccaaattttccattccaaggcttcctaatagatctttggtggcagaattgaattatgtaaataat |
8458829 |
T |
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| Q |
217 |
tacaaaataaaggacgatccatacaactccaaagtcaacaacagttcaatag |
268 |
Q |
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| T |
8458830 |
tacaaaataaaggatgatccatacaactccaaagtcaacaacagttcaatag |
8458881 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 1618009 - 1618097
Alignment:
| Q |
84 |
ttcttctttttgttattgtaatacaagaggaatttcagcaagaaacaaggtgcagaagattcagctgaccaaattttccattccaaggcttc |
175 |
Q |
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| T |
1618009 |
ttcttctttttcttattgtcatagaggaagaatttctacaagaaacacggtg---aagattcagctatccaaattctccattccaagccttc |
1618097 |
T |
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