View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2697_low_43 (Length: 276)
Name: NF2697_low_43
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_43 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 49624751 - 49624585
Alignment:
| Q |
1 |
agtggatgtccatttaactatatgattattgagtcatactattagatcaaagtaaactattgtacttatcttataagtcacaccttcatatgtatatctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49624751 |
agtggatgtccatttaactatatgattattgagtcatactattagatcaaagtaaactattgtacttatcttataagtcacaccttcatatgtatatctc |
49624652 |
T |
|
| Q |
101 |
aaatcatatcattgtaaaataaaaatcatatgaaacataattgaagatcacaagagaataataaaat |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49624651 |
aaatcatatcattgtaaaataaaaatcatatgaaacataattgaagatcacaacagaataataaaat |
49624585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 49624553 - 49624488
Alignment:
| Q |
197 |
tcctttcatgtctaccagagtttcagacatttatcttttaagctaagcgtacaccgattgtactaa |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
49624553 |
tcctttcatgtctaccagagtttcagacatttatcttttaatctaagcgtacacctattgtactaa |
49624488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 13461989 - 13461946
Alignment:
| Q |
126 |
tcatatgaaacataattgaa-gatcacaagagaataataaaata |
168 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
13461989 |
tcatatgaaacataattgtatgatcacaagagaataataaaata |
13461946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University