View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_low_44 (Length: 275)
Name: NF2697_low_44
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_44 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 39 - 256
Target Start/End: Complemental strand, 54424917 - 54424702
Alignment:
| Q |
39 |
tgtaaaaaactgcaacttatttgatatgcctcttcatggttaccaattcacatggttcaagagcatcggcacgccctcctccaaggaagctcgcattgac |
138 |
Q |
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| T |
54424917 |
tgtaaaagactgcaacttatttgatatgcctcttcatggttgccaattcacatggttcaagagcatcggcacgccctcctccaaggaaactcgcattgac |
54424818 |
T |
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| Q |
139 |
cgtgctctagtcacatcttcctggcaaacacttaatccaaacgctgccctccagactttggtggcctctatatctgaccacactcctcttctcctacagc |
238 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54424817 |
cgtgctctagtcacatcttcctggcaaacactttatccaaactctgccctccagaccttggtggcctctatatctgaccacactcctcttctcctacagc |
54424718 |
T |
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| Q |
239 |
ttttaattctataccgtg |
256 |
Q |
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|||||||||||||||| |
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| T |
54424717 |
--ttaattctataccgtg |
54424702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 20119921 - 20120126
Alignment:
| Q |
35 |
atgctgtaaaaaactgcaacttatttgatatgcctcttcatggttaccaattcacatggttcaagagcatcggcacgccctcctccaaggaagctcgcat |
134 |
Q |
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||||||| ||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||||||||||| || || |
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| T |
20119921 |
atgctgttaaagactgcaacttatttgatatgcctctccacagttaccaattcacatggttcaagagcatcggcacaccctcttccaaggaagcccgtat |
20120020 |
T |
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| Q |
135 |
tgaccgtgctctagtcacatcttcctggcaaacacttaatccaaacgctgccctccagactttggtggcctctatatctgaccacactcctcttctccta |
234 |
Q |
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| T |
20120021 |
tgatcgtgctttggtcacatcttcttggcaatcactatacccaaacgcttccctccagaccttggtggcctctatatctgaccacacccctctgcttctg |
20120120 |
T |
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| Q |
235 |
cagctt |
240 |
Q |
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|||||| |
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| T |
20120121 |
cagctt |
20120126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9318515 - 9318556
Alignment:
| Q |
1 |
ataataatgtgaagaagatgttcgtaattgcattatgctgta |
42 |
Q |
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| T |
9318515 |
ataataatgtgaagaagatgttcataattgcattatggtgta |
9318556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9255253 - 9255294
Alignment:
| Q |
1 |
ataataatgtgaagaagatgttcgtaattgcattatgctgta |
42 |
Q |
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||||||||||||||||||||||| |||| |||||||| |||| |
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| T |
9255253 |
ataataatgtgaagaagatgttcataatagcattatggtgta |
9255294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 240176 - 240105
Alignment:
| Q |
75 |
tggttaccaattcacatggttcaagagcatcggcacgccctcctccaaggaagctcgcattgaccgtgctct |
146 |
Q |
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||||||||||| |||||||||||| || ||||| || | ||| || |||||||| ||||||||||||||||| |
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| T |
240176 |
tggttaccaatacacatggttcaaaagtatcggaactcactcttcgaaggaagcccgcattgaccgtgctct |
240105 |
T |
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