View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_low_48 (Length: 253)
Name: NF2697_low_48
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_48 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 32 - 253
Target Start/End: Original strand, 6738786 - 6739002
Alignment:
| Q |
32 |
caagggtaaaactatttcaactgctcatttcaatttaggtgacttcaaagctatctttataatttgttatttccctctcccattttgagctcttattatc |
131 |
Q |
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| T |
6738786 |
caagggtaaaactatttcaactgctcatttcaatttaggtgacttcaaagctatct--ataatttgttatttccctctcccattttgagctcttat---c |
6738880 |
T |
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| Q |
132 |
acacattatgcatttctgtgacactgcgcaaaccaccaactttgcaccatctccagccaagcatcttttggcctcttcctcctactttaacctaattttt |
231 |
Q |
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| T |
6738881 |
acacattatgcatttctgtgacactgcgcaaaccaccaactttgcaccatctccagccaagcatcttttggcctcttcctcctactttaacctaattttt |
6738980 |
T |
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| Q |
232 |
gggtataaatattggtaacttc |
253 |
Q |
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|||||||||||||||||||||| |
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| T |
6738981 |
gggtataaatattggtaacttc |
6739002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 38512855 - 38512906
Alignment:
| Q |
192 |
gcatcttttggcctcttcctcctactttaacctaatttttgggtataaatat |
243 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
38512855 |
gcatcttttggcctcttcctcctactttaacctatttttttagtataaatat |
38512906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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