View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2697_low_58 (Length: 236)

Name: NF2697_low_58
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2697_low_58
NF2697_low_58
[»] chr4 (5 HSPs)
chr4 (156-236)||(41152107-41152187)
chr4 (38-95)||(41151989-41152046)
chr4 (1-37)||(31846923-31846959)
chr4 (1-36)||(46321467-46321502)
chr4 (2-34)||(31240577-31240609)
[»] chr1 (6 HSPs)
chr1 (1-37)||(718981-719017)
chr1 (1-37)||(28739436-28739472)
chr1 (1-37)||(10449579-10449615)
chr1 (5-37)||(23332853-23332885)
chr1 (1-37)||(44801884-44801920)
chr1 (2-34)||(45085930-45085962)
[»] chr3 (5 HSPs)
chr3 (1-39)||(49159510-49159548)
chr3 (1-38)||(22894022-22894059)
chr3 (1-38)||(48342206-48342243)
chr3 (1-37)||(11512386-11512422)
chr3 (1-42)||(20496477-20496518)
[»] chr5 (4 HSPs)
chr5 (1-37)||(4376475-4376511)
chr5 (1-37)||(19417435-19417471)
chr5 (1-37)||(29385417-29385453)
chr5 (1-37)||(22097506-22097542)
[»] chr2 (3 HSPs)
chr2 (1-37)||(7755335-7755371)
chr2 (1-36)||(39819054-39819089)
chr2 (1-37)||(5913515-5913551)
[»] chr7 (5 HSPs)
chr7 (1-36)||(7211860-7211895)
chr7 (1-36)||(17272699-17272734)
chr7 (1-36)||(46282868-46282903)
chr7 (1-34)||(32315709-32315742)
chr7 (5-37)||(25099376-25099408)
[»] chr6 (2 HSPs)
chr6 (1-30)||(369542-369571)
chr6 (1-37)||(369437-369473)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 41152107 - 41152187
Alignment:
Q  156 attattgtatggtctcttttaatgatataaacaaaagcaaagcatcgtcttccacacatgaaatgaccatatgatatgaga 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41152107 attattgtatggtctcttttaatgatataaacaaaagcaaagcatcgtcttccacacatgaaatgaccatatgatatgaga 41152187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 41151989 - 41152046
Alignment:
Q  38 taaattaacaggacactattttgtagcttggattattcgtgtcgattccatggtagta 95  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41151989 taaattaacaggacattattttgtagcttggattattcgtgtcgattccatggtagta 41152046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31846923 - 31846959
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  31846923 caatgtcaccaaccacaatgtcacccaagtgctaccc 31846959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 46321467 - 46321502
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctacc 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  46321467 caatatcaccaaccacaatgtcactcaagtgctacc 46321502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 31240577 - 31240609
Alignment:
Q  2 aatgtcaccaaccacaatgtcactcaagtgcta 34  Q
    ||||| |||||||||||||||||||||||||||    
T  31240577 aatgttaccaaccacaatgtcactcaagtgcta 31240609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 719017 - 718981
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  719017 caatgtcaccaaccacaatgtcactcaagtgctaccc 718981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28739436 - 28739472
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28739436 caatgtcaccaaccacaatgtcacccaagtgctaccc 28739472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10449579 - 10449615
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  10449579 caatgtcaccaaccacaatgtcatccaagtgctaccc 10449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 23332885 - 23332853
Alignment:
Q  5 gtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||| ||||||||||||||||||||||||||||    
T  23332885 gtcatcaaccacaatgtcactcaagtgctaccc 23332853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44801884 - 44801920
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  44801884 caatgtcaccaaccacaatgtcatccaagtgctaccc 44801920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 45085962 - 45085930
Alignment:
Q  2 aatgtcaccaaccacaatgtcactcaagtgcta 34  Q
    |||||||||||||||||||||| ||||||||||    
T  45085962 aatgtcaccaaccacaatgtcaatcaagtgcta 45085930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 49159510 - 49159548
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctacccta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  49159510 caatgtcaccaaccacaatgtcacccaagtgctacccta 49159548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22894022 - 22894059
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccct 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  22894022 caatgtcaccaaccacaatgtcacccaagtgctaccct 22894059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48342243 - 48342206
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccct 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  48342243 caatgtcaccaaccacaatgtcacccaagtgctaccct 48342206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11512422 - 11512386
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  11512422 caatgtcaccaaccacaatgtcacccaagtgctaccc 11512386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20496518 - 20496477
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccctaaat 42  Q
    |||||||||| |||||||||||||  ||||||||||||||||    
T  20496518 caatgtcaccgaccacaatgtcaccaaagtgctaccctaaat 20496477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4376475 - 4376511
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4376475 caatgtcatcaaccacaatgtcactcaagtgctaccc 4376511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19417471 - 19417435
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  19417471 caatgtcaccaaccacaatgtcacccaagtgctaccc 19417435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29385417 - 29385453
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29385417 caatgtcaccaaccacaatgtcacccaagtgctaccc 29385453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22097506 - 22097542
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  22097506 caatgtcaccaactacaatgtcattcaagtgctaccc 22097542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7755371 - 7755335
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  7755371 caatgtcaccaaccacaatgtcacccaagtgctaccc 7755335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39819089 - 39819054
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctacc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  39819089 caatgtcaccaaccacaatgtcacccaagtgctacc 39819054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5913551 - 5913515
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||||||||||||||||||| |||||| |||||    
T  5913551 caatgtcaccaaccacaatgtcacccaagtgttaccc 5913515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7211895 - 7211860
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctacc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  7211895 caatgtcaccaaccacaatgtcacccaagtgctacc 7211860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17272734 - 17272699
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctacc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  17272734 caatgtcaccaaccacaatgtcacccaagtgctacc 17272699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 46282903 - 46282868
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctacc 36  Q
    ||||||||||||| ||||||||||||||||||||||    
T  46282903 caatgtcaccaactacaatgtcactcaagtgctacc 46282868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32315742 - 32315709
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgcta 34  Q
    |||||||||||||||||||||||| |||||||||    
T  32315742 caatgtcaccaaccacaatgtcacgcaagtgcta 32315709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 25099376 - 25099408
Alignment:
Q  5 gtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    ||||||||||||||| |||||||||||||||||    
T  25099376 gtcaccaaccacaatttcactcaagtgctaccc 25099408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 369542 - 369571
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagt 30  Q
    ||||||||||||||||||||||||||||||    
T  369542 caatgtcaccaaccacaatgtcactcaagt 369571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 369473 - 369437
Alignment:
Q  1 caatgtcaccaaccacaatgtcactcaagtgctaccc 37  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  369473 caatgtcatcaaccacaatgtcacccaagtgctaccc 369437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University