View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2697_low_63 (Length: 206)
Name: NF2697_low_63
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_low_63 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 57 - 192
Target Start/End: Complemental strand, 27736584 - 27736449
Alignment:
| Q |
57 |
aatcttcctctctcacatcacagccttcacgttccttccatttgcttttgagaaaactatggctgcaacaagccaaaaggttagtaaccatgttcctgat |
156 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27736584 |
aatctgcctctctcacatcacagccttcacgttccttccatttgcttttgagaaaactatggctgcaacaaaccaaaaggttagtaaccatgttcctgat |
27736485 |
T |
|
| Q |
157 |
gatatcgtcttctctattttttcaaaactacctttg |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27736484 |
gatatcgtcttttctattttttcaaaactacctttg |
27736449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 27725280 - 27725201
Alignment:
| Q |
113 |
ctatggctgcaacaagccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttg |
192 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27725280 |
ctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttg |
27725201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 27596341 - 27596280
Alignment:
| Q |
131 |
aaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttg |
192 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27596341 |
aaaaggttagtatctatgttcctgaagatatcgtcttctctattctttcaaaactacctttg |
27596280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 27717937 - 27717860
Alignment:
| Q |
112 |
actatggctgcaacaagccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacct |
189 |
Q |
| |
|
||||||||| |||||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
27717937 |
actatggctccaacaaatcaaaaggttagtcttcatgttcccgaagatgtcgtcttctctatattttcaaaactacct |
27717860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 27590293 - 27590233
Alignment:
| Q |
131 |
aaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactaccttt |
191 |
Q |
| |
|
||||||||| || | |||||| ||| ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
27590293 |
aaaaggttaatatctatgttcttgaatatatcgtcttctctattctttcgaaactaccttt |
27590233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 14682920 - 14682833
Alignment:
| Q |
104 |
ttgagaaaactatggctgcaacaagccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactaccttt |
191 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14682920 |
ttgagaaacctatggctccaacaaaccaaaaggttagtaaccatgttcctgaagatatcgtcttttctattttttcaaaactaccttt |
14682833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 39725537 - 39725480
Alignment:
| Q |
134 |
aggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactaccttt |
191 |
Q |
| |
|
||||||| || ||||| ||||||||||| |||||||||||| | |||||||| ||||| |
|
|
| T |
39725537 |
aggttagcaatcatgtacctgatgatattgtcttctctattctgtcaaaacttccttt |
39725480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University