View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2698_high_1 (Length: 759)
Name: NF2698_high_1
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2698_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 274 - 743
Target Start/End: Original strand, 3189590 - 3190065
Alignment:
| Q |
274 |
gtacaagtagtagtagtgtatttttattctcttgagagcttgcctatttataattataaccacatttggtctactttattctatgtgcaccttccattat |
373 |
Q |
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| T |
3189590 |
gtacaagtagtagtaatgtatttttattctcttgagagtttgcctatttataattataaccatatttggtctactttattgtatgtgcaccgtccattat |
3189689 |
T |
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| Q |
374 |
attgttgaaaaacacattgagtatagcaagtttctagacttgctaatgaccatgcaatgaccacgnnnnnnnaagtttcagaagaattgcttcacgtttt |
473 |
Q |
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| T |
3189690 |
attgttgaaaaacacattgagtatagcaagtttctagacttgctaatgaccatgcaatgaccacgtttttttagtttttagaagaattgttttacgtttt |
3189789 |
T |
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| Q |
474 |
acttttgcatattgttgctcttttaaaatgtttgcataagaataacacattttcaagacattcaaacagttaagacttccttcaatatttaatgaaaaac |
573 |
Q |
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| T |
3189790 |
gcttttgcatattgttgctctt--aaaatgtttgcataagaataacacattttcaagacattcaaacagttaagacttccttcaatatttaatgaaaaac |
3189887 |
T |
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| Q |
574 |
aaatatgctcaatttagt-----ttatttgtatttcaagtgccagtaaaaatacaata---atatcccatttagaaatattttatttgattgattaaagt |
665 |
Q |
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| T |
3189888 |
aaatatgctcaatttagtatatattatttgtatgtcaagtgccagtaaaaatacaataataatatcccatttagaaatattttatttgattgattaaagt |
3189987 |
T |
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| Q |
666 |
ttctagtaaacaataaaataatttaacaataattaaaacagccgtgtgtgtgacctatagtttcaatattaagctaac |
743 |
Q |
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| T |
3189988 |
ttctagtaaacaataaaataatttaacaataattaaaacagccgtgtgtgtgacctatagtttcaatattaagctaac |
3190065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 3189337 - 3189576
Alignment:
| Q |
11 |
caaaggaaatggagagtgtaatggaaatatggaaagttatatacttgaaagaaaaaatatgttcacatcgtgtatagtgaaataaaatcggatcttagat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3189337 |
caaaggaaatggagagtgtaatggaaatatggaaagttatatacttgaaagaaaaaatatgttcacatcgtgtatagtgaaataaaatcggatctttaat |
3189436 |
T |
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| Q |
111 |
aatnnnnnnnntcttttttcaaagattttatgtgtatttgcatcgagactaattttactatcaaccttcgaatagtgg-nnnnnnnncttcgagcaaact |
209 |
Q |
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| T |
3189437 |
aat-aaaaaaatctttctttaaagactttacgtgtatttgtatcaagactaattttactatcaaccttcgaatagtggaacaaaaaacttcgagcaaact |
3189535 |
T |
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| Q |
210 |
tactatgagttgcttgtgggagaagaaagtggagaaaagat |
250 |
Q |
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| T |
3189536 |
tactatgagttgcttgtgggagaagaaagtgtagaaaagat |
3189576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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