View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2698_high_10 (Length: 356)
Name: NF2698_high_10
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2698_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 11231524 - 11231182
Alignment:
| Q |
1 |
gtatgattctcaattttatgataatatttcacttgcatgttannnnnnnattgtactctttgtccatgatgcatgttgttaactctccgaagtaatgctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
11231524 |
gtatgattctcaattttatgataatatttcacttgcatgttatttttttattgtactctttgtccatgatgcatgctgttaactctccgaagttatgctc |
11231425 |
T |
|
| Q |
101 |
aattcaactaactgatatttacgnnnnnnnn-gccttcgtttttggtatcaacagtcacaaatatacaacagtcgacaacaactttggtttccttcagct |
199 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11231424 |
aattcaactaactgatatttacgtttttttttgccttcgtttttggtatcaacagtcacaaatatacgacagtcgacaacaactttggtttccttcagct |
11231325 |
T |
|
| Q |
200 |
cttggcattcatgttcctcaacagattaggctagcacagcggatcacagacccggataccatggctagccatttattcagtgtcacattgtggtttattt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
11231324 |
cttggcattcatgttcctcaacagattaggctagcacagtggatcacagactcggataccatggctagccatttattcggtgttacattgtggtttattt |
11231225 |
T |
|
| Q |
300 |
ggaagggttggaaccaattgatttttaacaaaacacctttctg |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11231224 |
ggaagggttggaaccaattgatttttaacaaaacacctttctg |
11231182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 11243507 - 11243389
Alignment:
| Q |
1 |
gtatgattctcaattttatgataatatttcacttgcatgttannnnnnnattgtactctttgtccatgatgcatgttgttaactctccgaagtaatgctc |
100 |
Q |
| |
|
||||||||||||||||| | ||| || ||||||||||||| | ||||||||||||||| ||||||||||| |||||||||| |||| |||||| |
|
|
| T |
11243507 |
gtatgattctcaattttctaatactaattcacttgcatgtgatttttt-attgtactctttgtcgatgatgcatgtcgttaactctcataagttatgctc |
11243409 |
T |
|
| Q |
101 |
aattcaactaactgatattt |
120 |
Q |
| |
|
|||| || |||||||||||| |
|
|
| T |
11243408 |
aatttaattaactgatattt |
11243389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 12919532 - 12919451
Alignment:
| Q |
261 |
tggctagccatttattcagtgtcacattgtggtttatttggaagggttggaaccaattgatttttaacaaaacacctttctg |
342 |
Q |
| |
|
||||||| ||||||| |||||| ||| ||| ||| |||||||||||| |||||||||||||||| || |||||| ||||||| |
|
|
| T |
12919532 |
tggctagtcatttatccagtgttacactgtcgttgatttggaagggtcggaaccaattgattttcaataaaacaactttctg |
12919451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University