View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2698_high_12 (Length: 337)

Name: NF2698_high_12
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2698_high_12
NF2698_high_12
[»] chr3 (7 HSPs)
chr3 (18-324)||(11231524-11231829)
chr3 (18-129)||(31192625-31192736)
chr3 (18-129)||(31197336-31197447)
chr3 (18-129)||(52775577-52775688)
chr3 (18-129)||(52770869-52770980)
chr3 (204-254)||(11243664-11243714)
chr3 (254-295)||(11243595-11243635)
[»] scaffold0014 (2 HSPs)
scaffold0014 (18-129)||(93342-93453)
scaffold0014 (18-129)||(97980-98091)
[»] scaffold0013 (2 HSPs)
scaffold0013 (18-129)||(244973-245084)
scaffold0013 (18-84)||(251097-251163)
[»] chr7 (2 HSPs)
chr7 (18-129)||(16254356-16254467)
chr7 (18-129)||(16259066-16259177)
[»] chr4 (2 HSPs)
chr4 (18-129)||(13985826-13985937)
chr4 (18-129)||(13990464-13990575)
[»] chr6 (3 HSPs)
chr6 (18-129)||(26129076-26129187)
chr6 (18-120)||(29155894-29155996)
chr6 (46-129)||(26135990-26136073)
[»] chr5 (2 HSPs)
chr5 (18-122)||(30682527-30682631)
chr5 (18-122)||(30054703-30054807)
[»] chr1 (1 HSPs)
chr1 (19-111)||(13426843-13426935)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 11231829 - 11231524
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattgata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11231829 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattgata 11231730  T
Q  118 tgaaaacggttaattttcatgcaatgattatcaaattgagcaaaacaagactcacaccaaaatttactttcacaattctaaaactatgttaaattattaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11231729 tgaaaacggttaattttcatgcaatgattatcaaattgagcaaaacaagactcacaccaaaatttactttcacaattctaaaactatgttaaattattaa 11231630  T
Q  218 tcaataatgagaagataatgaaactcaatttttgtattcagaatccatgcaattcaattccaaacacttccacattctcatatcgcaacgagttatccat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11231629 tcaataatgagaagataatgaaactcaatttttgtattcagaatccatgcaattcaatt-caaacacttccacattctcatatcgcaacgagttatccat 11231531  T
Q  318 ttctgtg 324  Q
    |||||||    
T  11231530 ttctgtg 11231524  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 31192625 - 31192736
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgat 116  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||||||     
T  31192625 aaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaattgag 31192723  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  31192724 aagaaaacggtta 31192736  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 31197336 - 31197447
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgat 116  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||||||     
T  31197336 aaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaattgag 31197434  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  31197435 aagaaaacggtta 31197447  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 52775688 - 52775577
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgat 116  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||||||     
T  52775688 aaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaattgag 52775590  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  52775589 aagaaaacggtta 52775577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 52770980 - 52770869
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgat 116  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||||| |     
T  52770980 aaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaatttag 52770882  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  52770881 aagaaaacggtta 52770869  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 11243714 - 11243664
Alignment:
Q  204 tgttaaattattaatcaataatgagaagataatgaaactcaatttttgtat 254  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11243714 tgttaaattattaatcaataatgagaagataatgaaactcactttttgtat 11243664  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 11243635 - 11243595
Alignment:
Q  254 ttcagaatccatgcaattcaattccaaacacttccacattct 295  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  11243635 ttcagaatccatacaattcaatt-caaacacttccacattct 11243595  T

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Target: scaffold0014 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 93342 - 93453
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgat 116  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||||||     
T  93342 aaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaattgag 93440  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  93441 aagaaaacggtta 93453  T

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Target: scaffold0014; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 97980 - 98091
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgat 116  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||||||     
T  97980 aaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaattgag 98078  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  98079 aagaaaacggtta 98091  T

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Target: scaffold0013 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 244973 - 245084
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgat 116  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||||||     
T  244973 aaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaattgag 245071  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  245072 aagaaaacggtta 245084  T

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Target: scaffold0013; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 251097 - 251163
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaa 84  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||    
T  251097 aaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaa 251163  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 16254467 - 16254356
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaa-tcgagagaaaattctagattcattgaattgat 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |  ||| ||||  ||||||||||||||||||     
T  16254467 aaacttcaccatatccatggtgaaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaatttagataaaag-ctagattcattgaattgag 16254369  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  16254368 aagaaaacggtta 16254356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 16259177 - 16259066
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgat 116  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||||||     
T  16259177 aaacttcaccatatccatggtgaaagttgaagaaatgaagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaattgag 16259079  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  16259078 aagaaaacggtta 16259066  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 13985937 - 13985826
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgat 116  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||||||     
T  13985937 aaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaattgag 13985839  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  13985838 aagaaaacggtta 13985826  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 13990575 - 13990464
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgat 116  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||||||     
T  13990575 aaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaattgag 13990477  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  13990476 aagaaaacggtta 13990464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 26129187 - 26129076
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgat 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||| |||| ||||  |||||||||| |||||||     
T  26129187 aaacttcaccatatccatggtgaaagttgaagaaatgcagaagcttaacaaagaagaaggagagaaaattgagataaaa-gctagattcatagaattgag 26129089  T
Q  117 atgaaaacggtta 129  Q
    | |||||||||||    
T  26129088 aagaaaacggtta 26129076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 29155894 - 29155996
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtaga-agaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattgat 116  Q
    |||||||||| ||||||||||| || |||| | |||||||||| |||||  | |||||||||||||||   ||||||||| ||||||||||||||||||     
T  29155894 aaacttcaccgtatccatggtggaattagagaaaaatgcagaaacttaaggaagaagaaagagagaaagatagagaaaat-ctagattcattgaattgaa 29155992  T
Q  117 atga 120  Q
    ||||    
T  29155993 atga 29155996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 26136073 - 26135990
Alignment:
Q  46 gaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaattgatatgaaaacggtta 129  Q
    ||||||||||||||||||| ||| |||||||||||| |||| |||| ||||  |||||||||| ||||||| | |||||||||||    
T  26136073 gaagaaatgcagaagcttaccaaagaagaaagagagaaaattgagataaaa-gctagattcatagaattgagaagaaaacggtta 26135990  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 30682631 - 30682527
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattgata 117  Q
    |||||||||||||||||||||| ||  |||  ||||||||||| | ||  | |||||||||||||||   |||||||||||||||||||||||||||||     
T  30682631 aaacttcaccatatccatggtggaatcagagaaaatgcagaagttcaatgaagaagaaagagagaaaattagagaaaattctagattcattgaattgatc 30682532  T
Q  118 tgaaa 122  Q
    |||||    
T  30682531 tgaaa 30682527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 30054703 - 30054807
Alignment:
Q  18 aaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattgata 117  Q
    |||||||||||||||||||||| ||  |||  ||||||||||||| ||| |  ||||||||||||||   |||  ||||||||||||||||||||||||     
T  30054703 aaacttcaccatatccatggtggaatcagagaaaatgcagaagctcaacgaaaaagaaagagagaaaattagatcaaattctagattcattgaattgatc 30054802  T
Q  118 tgaaa 122  Q
    |||||    
T  30054803 tgaaa 30054807  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 13426843 - 13426935
Alignment:
Q  19 aacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaa 111  Q
    ||||||||||||||||||||| ||  |||  ||||| |||| ||||   | |||||||||||||||    |||||||||||||||||||||||    
T  13426843 aacttcaccatatccatggtggaatcagagaaaatgaagaaacttagggaagaagaaagagagaaaattggagaaaattctagattcattgaa 13426935  T

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