View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2698_high_13 (Length: 322)

Name: NF2698_high_13
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2698_high_13
NF2698_high_13
[»] chr1 (5 HSPs)
chr1 (3-175)||(1589390-1589562)
chr1 (17-77)||(19610807-19610867)
chr1 (15-81)||(35804335-35804400)
chr1 (15-81)||(48050942-48051008)
chr1 (19-71)||(13412081-13412133)
[»] chr3 (4 HSPs)
chr3 (5-105)||(30443743-30443843)
chr3 (5-108)||(43753749-43753852)
chr3 (32-72)||(29388286-29388326)
chr3 (26-106)||(32089348-32089428)
[»] chr7 (2 HSPs)
chr7 (19-81)||(24097990-24098052)
chr7 (26-105)||(30774136-30774216)
[»] chr6 (1 HSPs)
chr6 (4-71)||(21873107-21873174)
[»] chr8 (7 HSPs)
chr8 (4-78)||(27567522-27567596)
chr8 (17-105)||(21484951-21485038)
chr8 (31-106)||(29642829-29642904)
chr8 (32-81)||(3938326-3938375)
chr8 (29-106)||(24585973-24586050)
chr8 (32-81)||(31740327-31740376)
chr8 (15-80)||(33012906-33012971)
[»] chr4 (3 HSPs)
chr4 (19-105)||(47678825-47678911)
chr4 (20-105)||(10048533-10048618)
chr4 (32-79)||(17268068-17268115)
[»] chr2 (1 HSPs)
chr2 (19-106)||(41824098-41824185)
[»] chr5 (1 HSPs)
chr5 (15-105)||(4042664-4042754)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-72)||(278596-278651)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 3 - 175
Target Start/End: Complemental strand, 1589562 - 1589390
Alignment:
Q  3 gttttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataa 102  Q
    |||||||||| ||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1589562 gttttttacaaaagacaaattgatcaactaaagttaatatatttagttcataatatagattaaatacattaacttttgtttactcatatgtttcttataa 1589463  T
Q  103 aaagaatccgaaggagtggtatggtcttgtcacataactttctcacttgtgaaatagtagctatgtaataata 175  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1589462 aaaaaatccgaaggagtggtatggtcgtgtcacataactttctcacttgtgaaatagtagctatgtaataata 1589390  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 19610807 - 19610867
Alignment:
Q  17 acaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaactt 77  Q
    |||||| | ||||| ||||||||||||||||||||||||||| || ||||||||| |||||    
T  19610807 acaaatgggtcaacaaaaattgatgtatttagttcataatatggactaaatacatcaactt 19610867  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 35804335 - 35804400
Alignment:
Q  15 agacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgt 81  Q
    |||||||||| |||| |||||||| |||||||  | ||||||||| |||||||||||||||||||||    
T  35804335 agacaaattggtcaattaaaattg-tgtatttgatccataatataaattaaatacattaacttttgt 35804400  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 48051008 - 48050942
Alignment:
Q  15 agacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgt 81  Q
    |||||||||| ||||||||| ||||||||||| ||||||||| | ||  ||||||||| ||||||||    
T  48051008 agacaaattggtcaactaaagttgatgtatttggttcataatgtggaccaaatacatttacttttgt 48050942  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 13412133 - 13412081
Alignment:
Q  19 aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacat 71  Q
    |||||| |||| |||||||||||||||| ||||||||| |||| |||||||||    
T  13412133 aaattggtcaattaaaattgatgtatttggttcataatctagactaaatacat 13412081  T

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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 30443843 - 30443743
Alignment:
Q  5 tttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaa 104  Q
    ||||||||  |||||||||| ||||||||| ||||||||||| ||||||||||||||  ||||||||||||||||||  || ||| ||||||||||||||    
T  30443843 tttttacaagagacaaattggtcaactaaagttgatgtatttggttcataatatagaccaaatacattaacttttgttgacccatttgtttcttataaaa 30443744  T
Q  105 a 105  Q
    |    
T  30443743 a 30443743  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 43753852 - 43753749
Alignment:
Q  5 tttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaa 104  Q
    |||||| | |||||| ||| |||||| ||| ||||||||||| ||||||||| ||||| ||||||||||||||||||  |||||| ||||| |||||||     
T  43753852 tttttataaaagacagatttatcaaccaaagttgatgtatttggttcataatgtagatcaaatacattaacttttgttgactcatttgtttattataaat 43753753  T
Q  105 agaa 108  Q
    ||||    
T  43753752 agaa 43753749  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 29388286 - 29388326
Alignment:
Q  32 aaaattgatgtatttagttcataatatagattaaatacatt 72  Q
    ||||||||||||||||||| | ||||||| |||||||||||    
T  29388286 aaaattgatgtatttagtttaaaatatagtttaaatacatt 29388326  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 32089348 - 32089428
Alignment:
Q  26 tcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaag 106  Q
    |||||||||| | |||||||||  | ||||||| |||||| ||||||||||||| |  |  ||||||||| ||||||||||    
T  32089348 tcaactaaaactaatgtatttaacttataatatggattaagtacattaacttttattgatccatatgtttattataaaaag 32089428  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 24098052 - 24097990
Alignment:
Q  19 aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgt 81  Q
    |||||| |||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  24098052 aaattggtcaactaaaattgatgtatttgattcataatatagattaaatacattaaattttgt 24097990  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 30774216 - 30774136
Alignment:
Q  26 tcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtt-tcttataaaaa 105  Q
    ||||| |||||||||||||||| || || ||| ||||||||||||| |||||||||  |||||| | || |||||||||||    
T  30774216 tcaaccaaaattgatgtatttaatttattataaagattaaatacatcaacttttgttgactcatttattatcttataaaaa 30774136  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 21873174 - 21873107
Alignment:
Q  4 ttttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacat 71  Q
    ||||||| | || |||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||    
T  21873174 ttttttataaaaaacaaattgatcaactaaaattgatttatttaattcataacatagatcaaatacat 21873107  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 27567596 - 27567522
Alignment:
Q  4 ttttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttt 78  Q
    ||||||| | |||| ||||||||| |||||||||||| ||||| ||||||||||||||  |||||||| ||||||    
T  27567596 ttttttataaaagataaattgatcgactaaaattgatatatttggttcataatatagaccaaatacatcaacttt 27567522  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 21485038 - 21484951
Alignment:
Q  17 acaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa 105  Q
    |||||||| ||||| ||||||||||||||| ||||||||| |||| ||||||||| || |||| | | ||||| | |||||||||||||    
T  21485038 acaaattggtcaaccaaaattgatgtatttggttcataatgtagactaaatacatcaatttttttgt-ctcatttatttcttataaaaa 21484951  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 29642904 - 29642829
Alignment:
Q  31 taaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaag 106  Q
    |||||| ||||||||||||| |||||||||| |||||| ||||| ||||||  ||  || ||| ||||||||||||    
T  29642904 taaaatagatgtatttagttaataatatagactaaatatattaatttttgttgaccaatttgtctcttataaaaag 29642829  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 3938375 - 3938326
Alignment:
Q  32 aaaattgatgtatttagttcataatatagattaaatacattaacttttgt 81  Q
    ||||||||||||||| |||||||||| |||  |||||||| |||||||||    
T  3938375 aaaattgatgtatttggttcataataaagaccaaatacatcaacttttgt 3938326  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 24586050 - 24585973
Alignment:
Q  29 actaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaag 106  Q
    |||||| ||||||||||||||| || || ||||  ||||| || |||||||||  |||||| | ||||||||||||||    
T  24586050 actaaagttgatgtatttagtttatcatgtagaccaaataaatcaacttttgttgactcatttatttcttataaaaag 24585973  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 31740376 - 31740327
Alignment:
Q  32 aaaattgatgtatttagttcataatatagattaaatacattaacttttgt 81  Q
    |||||||||||||||  ||| ||||||||||||||||||| || ||||||    
T  31740376 aaaattgatgtatttcattcgtaatatagattaaatacatcaagttttgt 31740327  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 33012971 - 33012906
Alignment:
Q  15 agacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttg 80  Q
    |||||||| ||| ||||||| |||||||||||  ||||||| |||||  ||||| |||||||||||    
T  33012971 agacaaatggattaactaaagttgatgtatttgattcataacatagaccaaatatattaacttttg 33012906  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 47678825 - 47678911
Alignment:
Q  19 aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa 105  Q
    |||||| |||||||||||||||||||||  || ||||| ||||| ||||||||||  ||||||  |||||| | |||||||||||||    
T  47678825 aaattggtcaactaaaattgatgtatttgatttataatgtagatcaaatacattagtttttgttgactcatttatttcttataaaaa 47678911  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 10048533 - 10048618
Alignment:
Q  20 aattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa 105  Q
    ||||| |||||||||||| |||||||| |||||  |||||||  |||||||| |||||||||  | |||| |||||||||||||||    
T  10048533 aattggtcaactaaaattaatgtatttggttcaggatatagaccaaatacatcaacttttgttgattcatttgtttcttataaaaa 10048618  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 17268115 - 17268068
Alignment:
Q  32 aaaattgatgtatttagttcataatatagattaaatacattaactttt 79  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  17268115 aaaattgatgtatgtggttcataatatagatcaaatacattaactttt 17268068  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 41824185 - 41824098
Alignment:
Q  19 aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaag 106  Q
    |||||| |||||||||||||||||||||||||||||||   ||| ||||| ||||| ||||||  |||| |  || ||||||||||||    
T  41824185 aaattggtcaactaaaattgatgtatttagttcataatgatgatcaaatatattaatttttgttaactcgttcgtgtcttataaaaag 41824098  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 4042754 - 4042664
Alignment:
Q  15 agacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa 105  Q
    |||||||||||| ||||| | ||||||||||  ||| ||||||||||| |||| ||| ||||||| |  |||||| | |||||||||||||    
T  4042754 agacaaattgattaactagagttgatgtattcggtttataatatagatcaaatgcatcaacttttattgactcatttatttcttataaaaa 4042664  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 278651 - 278596
Alignment:
Q  19 aaattgatcaactaaaattgatgtatttagttcataat--atagattaaatacatt 72  Q
    |||||| |||| |||||||||||||||| |||||||||  ||||| ||||||||||    
T  278651 aaattggtcaattaaaattgatgtatttggttcataatagatagactaaatacatt 278596  T

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