View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2698_high_14 (Length: 314)
Name: NF2698_high_14
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2698_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 11231057 - 11230899
Alignment:
| Q |
9 |
aaggatcaaagtagatgaaggatgttttcaaaatggcacaactggttacgttgcttagcacgggatcacactggtttgttgtaatggtgcattaaccaat |
108 |
Q |
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| T |
11231057 |
aaggatcaaagtagatgaaggatgttttcaaaatggcacaactggttaggttgcttagcacgggatcacactggtttgttgtaatggtgcattaaccaat |
11230958 |
T |
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| Q |
109 |
aatttcacattagtcttagaccaacatacaatgtatgtttgtgtgattgttgctgttat |
167 |
Q |
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| T |
11230957 |
aatttcacattagtcttagaccaacatacaatgtatgtttgtgtgattgttgctgttat |
11230899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 164 - 310
Target Start/End: Complemental strand, 11230490 - 11230344
Alignment:
| Q |
164 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattgtccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
263 |
Q |
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| T |
11230490 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattatccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
11230391 |
T |
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| Q |
264 |
tcctatatccaacggtggttgcttaggagtgattccccgtctctgct |
310 |
Q |
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| T |
11230390 |
tcctatatccaacgatggttgcttaggagtgattccccgtctctgct |
11230344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 11243233 - 11243086
Alignment:
| Q |
20 |
tagatgaaggatgttttcaaaatggcacaactggttacgttgcttagcacgggatcacactggtttgttgtaatggtgcattaaccaataatttcacatt |
119 |
Q |
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| T |
11243233 |
tagatgcaggatgttttcaaaatggcacaactggttaggttgcttagcacgggatcacactgttttgttgtaatgctgcagtaaccaaaaattccgcatt |
11243134 |
T |
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| Q |
120 |
agtcttagaccaacatacaatgtatgtttgtgtgattgttgctgttat |
167 |
Q |
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| T |
11243133 |
agtctcagaccaacatacaatgtatctttgtgtgattggtgctgttat |
11243086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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