View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2698_high_6 (Length: 438)
Name: NF2698_high_6
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2698_high_6 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 256 - 438
Target Start/End: Complemental strand, 25962342 - 25962160
Alignment:
| Q |
256 |
acattataattcaaaatatcaaacttaatataagccgtacgatcttgatcgaacgatcaatttttatttaatatttataaataaatgtaaaactgctccc |
355 |
Q |
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| T |
25962342 |
acattataattcaaaatatcaaacttaatataaaccgtacgatcttgatcgaacgatcaatttttatttaatatttataaataaatgtaaaactgctccc |
25962243 |
T |
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| Q |
356 |
tccctttctttgtactgcatacattctgttgcttcgtcttcagtgttgtgctggcgaccctctctctcattttctgctccacc |
438 |
Q |
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| T |
25962242 |
tccctttctttgtactgcatacattctgttgcttcgtcttcagtgttgtgctggcgaccctctctctcattttctgctccacc |
25962160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 25962610 - 25962418
Alignment:
| Q |
13 |
aatatcaatgaccatcg-taaaaatggaacggtagaaaatcacattaattttatcgggcatctttatcattgtcgttatcgtaaaaacatagtgtaatac |
111 |
Q |
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| T |
25962610 |
aatatcaatgaccattggtaaaaatggaacagtagaaaatcacattaattttatcgggcatcattatcattgtcgttatcgtaaatacacagtgtagtac |
25962511 |
T |
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| Q |
112 |
aactataaaaagttgtaagaagttttacactcaatcaactttaatgattatcgccaaagctcactgtttctgcgaaaccagatcccctataat |
204 |
Q |
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| T |
25962510 |
aactataaaaagttgtaagaagttttacacttaatcaactttaataattctcgcaaaagctcactgtttttgtgaaacttgattccctataat |
25962418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 25962803 - 25962631
Alignment:
| Q |
32 |
aaaatggaacggtagaaaatcacattaattttatcgggcatctttatcattgtcgttatcgtaaaaacatagtgtaatacaactataaaaagttgtaaga |
131 |
Q |
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| T |
25962803 |
aaaatggaacggtagaaaatcatattaattttatctggcatcattatcattgtcgttatcgtaaatacacaatgtagtacaactataaaaagttgtaaga |
25962704 |
T |
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| Q |
132 |
agttttacactcaatcaactttaatgattatcgccaaagctcactgtttctgcgaaaccagatcccctataat |
204 |
Q |
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| T |
25962703 |
agttcaacacgcaatcaactttaatgattctcgcaaaatctcacgctttttgtgaaacttgattccctataat |
25962631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 25963000 - 25962846
Alignment:
| Q |
50 |
atcacattaattttatcgggcatctttatcattgtcgttatcgtaaaaacatagtgtaatacaactataaaaagttgtaagaagttttacactcaatcaa |
149 |
Q |
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| T |
25963000 |
atcacatcaattttatcaagcatcatgatcattgtcgttatcgtaaatacacaatgtagtataactgtagaaagttgtaagaagttttacacgcaatcaa |
25962901 |
T |
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| Q |
150 |
ctttaatgattatcgccaaagctcactgtttctgcgaaaccagatcccctataat |
204 |
Q |
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| T |
25962900 |
ctttaatgattctcgcaaaagctcacattttttgtgaaacttgattccctataat |
25962846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 25977206 - 25977082
Alignment:
| Q |
51 |
tcacattaattttatcgggcatctttatcattgtcgttatcgtaaaaacatagtgtaatacaactataaaaagttgtaagaagttttacactcaatcaac |
150 |
Q |
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| T |
25977206 |
tcacatcaattttatagagcatcatcatcattgtcgttatcgtaaatacacaatgtagtacaactgtaaaaagttgtaagaagttcaacacgcaatcaac |
25977107 |
T |
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| Q |
151 |
tttaatgattatcgccaaagctcac |
175 |
Q |
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| T |
25977106 |
tttaatggttctcgcaaaagctcac |
25977082 |
T |
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