View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2698_low_2 (Length: 565)

Name: NF2698_low_2
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2698_low_2
NF2698_low_2
[»] chr4 (22 HSPs)
chr4 (424-549)||(39292080-39292209)
chr4 (259-320)||(36203229-36203290)
chr4 (137-181)||(37175798-37175842)
chr4 (137-181)||(39292309-39292353)
chr4 (269-320)||(20096287-20096338)
chr4 (269-319)||(13121538-13121588)
chr4 (264-322)||(13276120-13276178)
chr4 (270-308)||(18541506-18541544)
chr4 (269-319)||(18635524-18635574)
chr4 (274-320)||(22164291-22164337)
chr4 (274-320)||(29737666-29737712)
chr4 (277-319)||(33024150-33024192)
chr4 (274-320)||(43722758-43722804)
chr4 (265-322)||(8494978-8495035)
chr4 (257-322)||(11286786-11286851)
chr4 (269-314)||(38374956-38375001)
chr4 (265-322)||(38812862-38812919)
chr4 (270-314)||(6460096-6460140)
chr4 (269-321)||(7248328-7248380)
chr4 (274-322)||(21465602-21465650)
chr4 (269-321)||(30051884-30051936)
chr4 (264-320)||(36490561-36490617)
[»] chr1 (26 HSPs)
chr1 (274-321)||(22388197-22388244)
chr1 (274-321)||(41573291-41573338)
chr1 (262-321)||(43840335-43840394)
chr1 (270-320)||(41998344-41998394)
chr1 (266-319)||(2884462-2884515)
chr1 (270-322)||(18091194-18091247)
chr1 (258-319)||(27853349-27853410)
chr1 (269-318)||(44220982-44221031)
chr1 (257-313)||(49868011-49868067)
chr1 (257-320)||(7732415-7732478)
chr1 (269-320)||(16033467-16033518)
chr1 (274-321)||(29701342-29701389)
chr1 (269-316)||(41974758-41974805)
chr1 (274-320)||(30678835-30678881)
chr1 (263-321)||(41032923-41032981)
chr1 (269-319)||(44641521-44641571)
chr1 (274-315)||(9116894-9116935)
chr1 (257-322)||(11014223-11014288)
chr1 (257-318)||(23772282-23772343)
chr1 (257-290)||(27687617-27687650)
chr1 (264-321)||(41973247-41973304)
chr1 (274-314)||(10292935-10292975)
chr1 (270-318)||(18398633-18398681)
chr1 (274-322)||(29935974-29936022)
chr1 (269-321)||(36467042-36467094)
chr1 (274-322)||(44365970-44366018)
[»] chr2 (32 HSPs)
chr2 (264-322)||(11931596-11931654)
chr2 (269-320)||(29896311-29896362)
chr2 (266-316)||(1238159-1238209)
chr2 (269-322)||(3197096-3197149)
chr2 (274-311)||(3904204-3904241)
chr2 (274-322)||(28277698-28277746)
chr2 (266-322)||(45032684-45032740)
chr2 (275-322)||(6238587-6238634)
chr2 (257-300)||(7262819-7262862)
chr2 (269-320)||(27244650-27244701)
chr2 (269-316)||(34364512-34364559)
chr2 (257-300)||(37830726-37830769)
chr2 (269-319)||(6723094-6723144)
chr2 (264-318)||(7537105-7537159)
chr2 (264-322)||(9517021-9517079)
chr2 (133-167)||(17897868-17897902)
chr2 (273-319)||(43356654-43356700)
chr2 (270-315)||(13922650-13922695)
chr2 (257-294)||(30045472-30045509)
chr2 (257-294)||(30050635-30050672)
chr2 (257-294)||(30141679-30141716)
chr2 (266-315)||(30929059-30929108)
chr2 (133-170)||(39955494-39955531)
chr2 (262-322)||(7206116-7206176)
chr2 (271-307)||(11265143-11265179)
chr2 (269-321)||(27935048-27935100)
chr2 (264-300)||(30089062-30089098)
chr2 (264-300)||(30125666-30125702)
chr2 (264-316)||(31815899-31815951)
chr2 (264-320)||(32986005-32986061)
chr2 (264-320)||(33063979-33064035)
chr2 (264-300)||(39068720-39068756)
[»] chr8 (24 HSPs)
chr8 (269-322)||(7553670-7553723)
chr8 (133-180)||(3036534-3036581)
chr8 (257-300)||(24696011-24696054)
chr8 (264-322)||(26886054-26886112)
chr8 (264-320)||(8837913-8837969)
chr8 (269-320)||(6109162-6109213)
chr8 (264-319)||(6447183-6447238)
chr8 (262-321)||(13575281-13575340)
chr8 (269-316)||(33482166-33482213)
chr8 (266-320)||(8687859-8687913)
chr8 (270-319)||(8982561-8982610)
chr8 (257-314)||(10601762-10601819)
chr8 (269-322)||(14303156-14303209)
chr8 (274-319)||(32223901-32223946)
chr8 (269-322)||(33620889-33620942)
chr8 (274-322)||(1230683-1230731)
chr8 (274-322)||(1243763-1243811)
chr8 (274-322)||(1254463-1254511)
chr8 (264-312)||(7968952-7969000)
chr8 (263-319)||(11708980-11709036)
chr8 (269-297)||(12938944-12938972)
chr8 (264-300)||(22948093-22948129)
chr8 (269-321)||(32555246-32555298)
chr8 (269-321)||(33445562-33445614)
[»] chr7 (21 HSPs)
chr7 (257-320)||(964746-964809)
chr7 (264-315)||(1285081-1285132)
chr7 (257-322)||(3584195-3584260)
chr7 (274-323)||(22267571-22267620)
chr7 (135-180)||(24934749-24934794)
chr7 (268-316)||(3948051-3948099)
chr7 (269-321)||(35222916-35222968)
chr7 (264-320)||(42829246-42829302)
chr7 (279-322)||(20762831-20762874)
chr7 (269-320)||(30857241-30857292)
chr7 (258-320)||(1399155-1399217)
chr7 (266-300)||(28479870-28479904)
chr7 (258-319)||(5352323-5352384)
chr7 (263-300)||(37307885-37307922)
chr7 (257-321)||(8237637-8237701)
chr7 (266-318)||(9819563-9819615)
chr7 (266-318)||(10721488-10721540)
chr7 (264-320)||(19599138-19599194)
chr7 (274-314)||(29461843-29461883)
chr7 (262-318)||(41527555-41527611)
chr7 (269-321)||(43681007-43681059)
[»] chr6 (17 HSPs)
chr6 (257-300)||(2692228-2692271)
chr6 (275-319)||(7927694-7927738)
chr6 (133-181)||(28478663-28478711)
chr6 (133-181)||(29791118-29791166)
chr6 (269-320)||(12412270-12412321)
chr6 (257-319)||(8809300-8809362)
chr6 (273-319)||(12336347-12336393)
chr6 (277-319)||(21884981-21885023)
chr6 (267-320)||(2445292-2445345)
chr6 (267-320)||(3373396-3373449)
chr6 (257-322)||(31971520-31971585)
chr6 (276-320)||(11520583-11520627)
chr6 (269-317)||(14552333-14552381)
chr6 (269-321)||(15291707-15291759)
chr6 (269-321)||(24373727-24373779)
chr6 (264-300)||(28231437-28231473)
chr6 (134-181)||(29694677-29694722)
[»] chr5 (20 HSPs)
chr5 (269-320)||(40445976-40446027)
chr5 (257-322)||(1082224-1082289)
chr5 (264-324)||(8545001-8545061)
chr5 (274-322)||(10531531-10531579)
chr5 (262-316)||(17046331-17046385)
chr5 (274-320)||(28447486-28447532)
chr5 (269-327)||(34436837-34436895)
chr5 (274-319)||(4432110-4432155)
chr5 (269-302)||(7861018-7861051)
chr5 (257-322)||(8885246-8885311)
chr5 (270-319)||(42663222-42663271)
chr5 (137-181)||(2523798-2523842)
chr5 (274-314)||(2642785-2642825)
chr5 (267-315)||(6237734-6237782)
chr5 (269-321)||(10515545-10515597)
chr5 (258-290)||(13484542-13484574)
chr5 (267-307)||(14124307-14124347)
chr5 (270-314)||(14869991-14870035)
chr5 (274-318)||(17861974-17862018)
chr5 (137-181)||(34903400-34903444)
[»] chr3 (24 HSPs)
chr3 (274-321)||(7827500-7827547)
chr3 (274-321)||(7829888-7829935)
chr3 (269-320)||(32753821-32753872)
chr3 (270-325)||(48924337-48924392)
chr3 (269-315)||(48517669-48517715)
chr3 (269-314)||(12976619-12976664)
chr3 (269-321)||(28093346-28093398)
chr3 (264-322)||(7738660-7738718)
chr3 (264-314)||(10922320-10922370)
chr3 (262-312)||(39869817-39869867)
chr3 (264-318)||(46226089-46226143)
chr3 (274-319)||(7464513-7464558)
chr3 (269-318)||(8139710-8139759)
chr3 (257-322)||(9598430-9598495)
chr3 (274-323)||(22462302-22462351)
chr3 (274-323)||(23332640-23332689)
chr3 (269-322)||(28052399-28052452)
chr3 (133-170)||(31110632-31110669)
chr3 (266-319)||(38387966-38388019)
chr3 (269-321)||(7824799-7824851)
chr3 (264-300)||(24145411-24145447)
chr3 (266-314)||(35126283-35126331)
chr3 (274-318)||(37921020-37921064)
chr3 (269-321)||(41168155-41168207)
[»] scaffold0160 (1 HSPs)
scaffold0160 (257-320)||(22904-22967)
[»] scaffold0143 (1 HSPs)
scaffold0143 (269-316)||(4463-4510)
[»] scaffold0016 (1 HSPs)
scaffold0016 (269-319)||(99031-99081)
[»] scaffold0045 (2 HSPs)
scaffold0045 (270-319)||(63856-63905)
scaffold0045 (270-319)||(71188-71237)
[»] scaffold0086 (1 HSPs)
scaffold0086 (269-321)||(1599-1651)
[»] scaffold0038 (1 HSPs)
scaffold0038 (264-300)||(31934-31970)
[»] scaffold0008 (1 HSPs)
scaffold0008 (276-320)||(119562-119606)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 424 - 549
Target Start/End: Complemental strand, 39292209 - 39292080
Alignment:
Q  424 taatgttttaaatgaatctcaattactcaaatcttgaaagtttacacataaagatgtattaattaattaat----gacatacacgattgatgttgtaaaa 519  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  39292209 taatgttttaaatgaatctcaattactcatatcttcaaagtttacacataaagatgtattaattaattaattaatgacatacacgattgatgttgtaaaa 39292110  T
Q  520 caggtatatgatggctacacccggtgatga 549  Q
    ||||||||||||||||||||||||||||||    
T  39292109 caggtatatgatggctacacccggtgatga 39292080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 36203290 - 36203229
Alignment:
Q  259 aatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    ||||||||| |||| |||||||||||||||||| |||||||| |  ||| ||||||||||||    
T  36203290 aatctcggaccttgcatatattatgcattgtccttatcaactgagctaagctcacgaggaca 36203229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 37175798 - 37175842
Alignment:
Q  137 aatatgttgaatgcataatttttaagataaagttgctactttaag 181  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  37175798 aataagttgaatgcataatttccaagataaagttgctactttaag 37175842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 39292353 - 39292309
Alignment:
Q  137 aatatgttgaatgcataatttttaagataaagttgctactttaag 181  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  39292353 aataagttgaatgcataatttccaagataaagttgctactttaag 39292309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 20096287 - 20096338
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| |||||||||||||| |||||| ||||| | |||||||||||||||||    
T  20096287 cttgcatatattatgcattatccctaccaactgagttaaactcacgaggaca 20096338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 13121588 - 13121538
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||| ||||||||||||||||||||| |||||||  ||| |||||||||||    
T  13121588 cttgcatatattatgcattgtccctaccaactaagctaagctcacgaggac 13121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 13276178 - 13276120
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||| |||| ||||||||||||||||||||| ||| | | |||| ||||||||||||||    
T  13276178 cggaccttgcatatattatgcattgtccctaccaattgagttaagctcacgaggacaaa 13276120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 18541544 - 18541506
Alignment:
Q  270 ttgtatatattatgcattgtccctatcaactaaattaaa 308  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  18541544 ttgtatatattatgcattgtttctatcaactaaattaaa 18541506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 18635574 - 18635524
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    ||||||||||||||||||||||| |||||||| | |||| |||||| ||||    
T  18635574 cttgtatatattatgcattgtccttatcaactgagttaagctcacggggac 18635524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 22164291 - 22164337
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||||||||||||||| |||| |||||||  ||||||||||||||||    
T  22164291 atatattatgcattgttcctaccaactaagctaaactcacgaggaca 22164337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 29737712 - 29737666
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||||||||||||||| |||| |||||||||||| ||||| ||||||    
T  29737712 atatattatgcattgttcctagcaactaaattaagctcacaaggaca 29737666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 33024192 - 33024150
Alignment:
Q  277 tattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    ||||||||||||||| || ||||||| ||||||||||||||||    
T  33024192 tattatgcattgtccataccaactaagttaaactcacgaggac 33024150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 43722804 - 43722758
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||||||||||||||||| || ||||| | |||||||||||||||||    
T  43722804 atatattatgcattgtccataccaactgagttaaactcacgaggaca 43722758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 8495035 - 8494978
Alignment:
Q  265 ggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||| ||||||||||||||||||||| ||||| |  |||  |||||||||||||    
T  8495035 ggatcttgcatatattatgcattgtccctaccaactgagctaagttcacgaggacaaa 8494978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 11286786 - 11286851
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||| || |||| ||||||||||||||||| ||| ||||| || ||| |||| |||||||||    
T  11286786 tgaatctcagaccttgcatatattatgcattgtctctaccaactgaactaagctcaggaggacaaa 11286851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 38375001 - 38374956
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacg 314  Q
    |||| ||||||||||||||||||||| ||||||| |||| ||||||    
T  38375001 cttgcatatattatgcattgtccctaccaactaagttaagctcacg 38374956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 38812862 - 38812919
Alignment:
Q  265 ggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||| ||||||||||||||||||||| | ||| |  |||||||||||| |||||    
T  38812862 ggatcttgcatatattatgcattgtccctaccgactgagctaaactcacgagaacaaa 38812919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 6460096 - 6460140
Alignment:
Q  270 ttgtatatattatgcattgtccctatcaactaaattaaactcacg 314  Q
    ||||||||||||||||||||| |||| |||| | |||||||||||    
T  6460096 ttgtatatattatgcattgtctctattaactgagttaaactcacg 6460140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 7248380 - 7248328
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| |||| |||||||||||||| ||||||| | |||||||||||| |||||    
T  7248380 cttgcatattttatgcattgtcccaatcaactgagttaaactcacgatgacaa 7248328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 21465650 - 21465602
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||||||||||||| ||  |||| | |||||||||||||||||||    
T  21465650 atatattatgcattgtccttactaactgagttaaactcacgaggacaaa 21465602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 30051884 - 30051936
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| |||||||||||||||||| || ||||| || ||| |||||||||||||    
T  30051884 cttgcatatattatgcattgtccataacaactgaactaagctcacgaggacaa 30051936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 36490617 - 36490561
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    ||||||||| ||| |||||||||||||| || ||||||| |||| ||||||| ||||    
T  36490617 cggatcttgcatacattatgcattgtccataccaactaagttaagctcacgatgaca 36490561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 22388197 - 22388244
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  22388197 atatattatgcattgtccctatcaactaagttaaacttacgaggacaa 22388244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 41573291 - 41573338
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  41573291 atatattatgcattgtccctaccaactgagttaaactcacgaggacaa 41573338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 43840335 - 43840394
Alignment:
Q  262 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    ||||||||||  |||| ||||||||||||| |||||||| | ||||||||||||||||||    
T  43840335 ctcggatcttacatattttatgcattgtccatatcaactgagttaaactcacgaggacaa 43840394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 41998394 - 41998344
Alignment:
Q  270 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||||||||||||| |||||||||||||||| | |||| ||||||||||||    
T  41998394 ttgtatatattatgaattgtccctatcaactgagttaatctcacgaggaca 41998344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 2884462 - 2884515
Alignment:
Q  266 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||||||||||||||||||||||||| |||||||| | ||||  ||||||||||    
T  2884462 gatcttgtatatattatgcattgtccatatcaactgagttaaggtcacgaggac 2884515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 18091247 - 18091194
Alignment:
Q  270 ttgtatatatt-atgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||||||| |||||||||||||||||||| | |||| ||||||||||||||    
T  18091247 ttgtatatatttatgcattgtccctatcaactgagttaagctcacgaggacaaa 18091194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 27853410 - 27853349
Alignment:
Q  258 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    ||||| |||||||||||||||||||||||||| | || ||||| | |||| |||||||||||    
T  27853410 gaatcccggatcttgtatatattatgcattgttcataccaactgagttaagctcacgaggac 27853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 44221031 - 44220982
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 318  Q
    |||||||||||| ||||||||| ||||||||||| |||| ||||||||||    
T  44221031 cttgtatatattgtgcattgtctctatcaactaagttaagctcacgagga 44220982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 49868067 - 49868011
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcac 313  Q
    ||||||||||| |||| |||||||||||||| ||| |||||||| | ||||||||||    
T  49868067 tgaatctcggaccttgcatatattatgcattatccatatcaactgagttaaactcac 49868011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 7732478 - 7732415
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||||| ||||||||| |||||||||||||| |||  ||||||| |  ||||||||||||||||    
T  7732478 tgaatcccggatcttggatatattatgcattatccaaatcaactgagctaaactcacgaggaca 7732415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 16033467 - 16033518
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| ||||||||||||||||||||||||||| | | || ||||||||||||    
T  16033467 cttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 16033518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 29701342 - 29701389
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||||||||||||||||| |||||||||| |||| ||||||| |||||    
T  29701342 atatattatgcattgtccatatcaactaagttaagctcacgaagacaa 29701389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 41974805 - 41974758
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 316  Q
    |||| |||||||||||||| |||||||||||| || ||||||||||||    
T  41974805 cttgcatatattatgcattatccctatcaactgaactaaactcacgag 41974758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 30678835 - 30678881
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    ||||||||||||||||||||| ||||| | |||| ||||||||||||    
T  30678835 atatattatgcattgtccctaccaactgagttaagctcacgaggaca 30678881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 41032981 - 41032923
Alignment:
Q  263 tcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    ||||| ||||||||| ||||||||||| | |||||||| | |||| |||||||||||||    
T  41032981 tcggaccttgtatattttatgcattgttcatatcaactgagttaagctcacgaggacaa 41032923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 44641571 - 44641521
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||| |||||||||||||||||| |||||||| |  |||||||||||||||    
T  44641571 cttgcatatattatgcattgtccatatcaactgagctaaactcacgaggac 44641521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 9116894 - 9116935
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacga 315  Q
    |||||||||||||||||| |||||||| | ||||||||||||    
T  9116894 atatattatgcattgtccatatcaactgagttaaactcacga 9116935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 11014288 - 11014223
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||| || |||||| |||||||||||| |||| ||| ||||| |  ||||||||||||||||||    
T  11014288 tgaatcccgaatcttgcatatattatgcactgtctctaccaactgagctaaactcacgaggacaaa 11014223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 23772282 - 23772343
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 318  Q
    |||||||| ||||||||||||||||| |||||| ||||  |||| || |||| |||||||||    
T  23772282 tgaatctcagatcttgtatatattatacattgttcctacaaactgaactaaattcacgagga 23772343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 27687617 - 27687650
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtc 290  Q
    ||||||||| ||||||||||||||||||||||||    
T  27687617 tgaatctcgtatcttgtatatattatgcattgtc 27687650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 41973304 - 41973247
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| |||| ||||||||||||||||||||| ||| ||| |||| ||| |||||||||    
T  41973304 cggaccttgcatatattatgcattgtccctaccaattaagttaagctcgcgaggacaa 41973247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 10292975 - 10292935
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacg 314  Q
    ||||||||||||||||||||||||||| | |||| ||||||    
T  10292975 atatattatgcattgtccctatcaactgagttaagctcacg 10292935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 18398681 - 18398633
Alignment:
Q  270 ttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 318  Q
    |||| ||||||||| ||||||| || ||||| |||||||||||||||||    
T  18398681 ttgtctatattatgtattgtccttaccaactgaattaaactcacgagga 18398633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 29936022 - 29935974
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||||||||||||| || ||||| | |||||||||| ||||||||    
T  29936022 atatattatgcattgtccataccaactgagttaaactcacaaggacaaa 29935974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 36467042 - 36467094
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| |||||||||||||||||| |||||| | |||||| ||||| |||||||    
T  36467042 cttgcatatattatgcattgtccatatcaattgaattaagctcacaaggacaa 36467094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 44365970 - 44366018
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||||| ||||| |||| ||||| | |||||||||||||||||||    
T  44365970 atatattatgtattgttcctaccaactgagttaaactcacgaggacaaa 44366018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 11931654 - 11931596
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||||| ||||||||||||||||||||| ||| |||| ||| ||||||||||||||    
T  11931654 cggatcttgcatatattatgcattgtccctaccaattaaactaagctcacgaggacaaa 11931596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 29896311 - 29896362
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| ||||||||||||||||  ||||||||| |||||||||||||||||||    
T  29896311 cttgcatatattatgcattgtttctatcaactgaattaaactcacgaggaca 29896362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 1238209 - 1238159
Alignment:
Q  266 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 316  Q
    ||||||||||||||||||||||||||||||||| | | |||| ||||||||    
T  1238209 gatcttgtatatattatgcattgtccctatcaattgagttaagctcacgag 1238159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 3197096 - 3197149
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||| ||||||||||||||||||||| ||||| |  ||||||||||||||||||    
T  3197096 cttgcatatattatgcattgtccctaccaactgagctaaactcacgaggacaaa 3197149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 3904241 - 3904204
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactc 311  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  3904241 atatattatgcattgtccctatcaactaagttaaactc 3904204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 28277698 - 28277746
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||||||||||||| || |||||||  ||||||||||||||||||    
T  28277698 atatattatgcattgtccttaccaactaagctaaactcacgaggacaaa 28277746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 45032740 - 45032684
Alignment:
Q  266 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||| ||||||||||||||||||||| ||||| |  ||| ||||||||||||||    
T  45032740 gatcttgcatatattatgcattgtccctaccaactgaggtaagctcacgaggacaaa 45032684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 6238587 - 6238634
Alignment:
Q  275 tatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||||||||||||||| ||| |||  ||||||||||||||||||    
T  6238587 tatattatgcattgtccctaccaattaagctaaactcacgaggacaaa 6238634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 7262862 - 7262819
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaact 300  Q
    |||||||  |||||||||||||||||||||||||| ||||||||    
T  7262862 tgaatctttgatcttgtatatattatgcattgtccatatcaact 7262819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 27244701 - 27244650
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| ||||||||||||||||||||||||||| |  ||| ||||||||||||    
T  27244701 cttgcatatattatgcattgtccctatcaactgagctaagctcacgaggaca 27244650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 34364512 - 34364559
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 316  Q
    ||||||||||||||||||| | |||| ||||||| |||||||||||||    
T  34364512 cttgtatatattatgcattattcctaccaactaagttaaactcacgag 34364559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 37830769 - 37830726
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaact 300  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||    
T  37830769 tgaatcttggatcttgtatatattatgtattgtccctaccaact 37830726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 6723094 - 6723144
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||| ||||||||| |||||||| |||||||| | ||||||||||||||||    
T  6723094 cttgcatatattatacattgtccatatcaactgagttaaactcacgaggac 6723144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 7537159 - 7537105
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 318  Q
    |||| |||| |||||||||||||||| |||||||||| | |||| ||||||||||    
T  7537159 cggaccttgcatatattatgcattgttcctatcaactgagttaatctcacgagga 7537105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 9517021 - 9517079
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||||||||||||||||||||| | || ||||| |  ||| ||||||||||||||    
T  9517021 cggatcttgtatatattatgcattgttcataccaactgagctaatctcacgaggacaaa 9517079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 167
Target Start/End: Original strand, 17897868 - 17897902
Alignment:
Q  133 ttttaatatgttgaatgcataatttttaagataaa 167  Q
    ||||||||||||||||||| |||||||||||||||    
T  17897868 ttttaatatgttgaatgcacaatttttaagataaa 17897902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 43356654 - 43356700
Alignment:
Q  273 tatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||||||||||||||||||||| |||||||  ||||||||| |||||    
T  43356654 tatatattatgcattgtccctaacaactaagataaactcactaggac 43356700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 13922650 - 13922695
Alignment:
Q  270 ttgtatatattatgcattgtccctatcaactaaattaaactcacga 315  Q
    ||||||||||||||||||||||||| ||||| | |||| |||||||    
T  13922650 ttgtatatattatgcattgtccctaccaactgagttaagctcacga 13922695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 30045509 - 30045472
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtcccta 294  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30045509 tgaatctcgaaccttgtatatattatgcattgtcccta 30045472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 30050672 - 30050635
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtcccta 294  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30050672 tgaatctcgaaccttgtatatattatgcattgtcccta 30050635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 30141716 - 30141679
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtcccta 294  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30141716 tgaatctcgaaccttgtatatattatgcattgtcccta 30141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 30929059 - 30929108
Alignment:
Q  266 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacga 315  Q
    |||||| ||||||||||||||||||| |||||||| | ||||||| ||||    
T  30929059 gatcttatatatattatgcattgtccatatcaactgagttaaacttacga 30929108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 39955494 - 39955531
Alignment:
Q  133 ttttaatatgttgaatgcataatttttaagataaagtt 170  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  39955494 ttttaatatgttgaatgcacaattttaaagataaagtt 39955531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 7206176 - 7206116
Alignment:
Q  262 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||| |||| ||||||||||||||||| ||| ||||| |  ||| ||||||||||||||    
T  7206176 ctcggaccttgcatatattatgcattgtctctaccaactgagctaagctcacgaggacaaa 7206116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 11265143 - 11265179
Alignment:
Q  271 tgtatatattatgcattgtccctatcaactaaattaa 307  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  11265143 tgtatatattatgcatcgtccctatcaactaagttaa 11265179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 27935100 - 27935048
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| ||||||| ||||||||||||| ||||| | |||||||||||| |||||    
T  27935100 cttgcatatattctgcattgtccctaccaactgagttaaactcacgatgacaa 27935048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 30089098 - 30089062
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaact 300  Q
    |||| |||||||||||||||||||||||||| |||||    
T  30089098 cggaccttgtatatattatgcattgtccctaccaact 30089062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 30125702 - 30125666
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaact 300  Q
    |||| |||||||||||||||||||||||||| |||||    
T  30125702 cggaccttgtatatattatgcattgtccctaccaact 30125666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 31815899 - 31815951
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 316  Q
    |||| |||| ||||||||||||||||||||| ||||| | |||| ||||||||    
T  31815899 cggaccttgcatatattatgcattgtccctaccaactgagttaagctcacgag 31815951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 32986061 - 32986005
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    ||||||||||||||||||| |||| | | |||||||| | ||||||||| |||||||    
T  32986061 cggatcttgtatatattattcatttttcatatcaactgagttaaactcaagaggaca 32986005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 33064035 - 33063979
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| |||| |||||||||||||||||| |||||||| |  ||| ||||||||||||    
T  33064035 cggaccttgcatatattatgcattgtccatatcaactgagctaagctcacgaggaca 33063979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 39068720 - 39068756
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaact 300  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  39068720 cggatcttgcatatattatgcattgtccttatcaact 39068756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 7553723 - 7553670
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||| ||||||||||||||||||||| ||||| | |||||||||||||||||||    
T  7553723 cttgcatatattatgcattgtccctaccaactgagttaaactcacgaggacaaa 7553670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 3036534 - 3036581
Alignment:
Q  133 ttttaatatgttgaatgcataatttttaagataaagttgctactttaa 180  Q
    |||||||| ||||||| || ||||||||||||||||||||||||||||    
T  3036534 ttttaataagttgaatacacaatttttaagataaagttgctactttaa 3036581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 24696011 - 24696054
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaact 300  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  24696011 tgaatctcggatcttgcatatattatgcattgtccatatcaact 24696054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 26886054 - 26886112
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||||  |||| ||||||||||||| || ||||||| |||||||||||||||||||    
T  26886054 cggatcttacatattttatgcattgtccataccaactaagttaaactcacgaggacaaa 26886112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 8837969 - 8837913
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| |||||||||||||||||||||||||||||||  | ||||  |||||||||||    
T  8837969 cggaccttgtatatattatgcattgtccctatcaaccgagttaagttcacgaggaca 8837913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 6109213 - 6109162
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    ||||||||| ||||||||||||| |||||||| |  ||||||||||||||||    
T  6109213 cttgtatattttatgcattgtccatatcaactgatataaactcacgaggaca 6109162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 6447238 - 6447183
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||| |||| |||||||||||||||||| || ||||| | ||||||||||||||||    
T  6447238 cggaccttgcatatattatgcattgtccataccaactgagttaaactcacgaggac 6447183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 13575340 - 13575281
Alignment:
Q  262 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||||| |||| |||| |||||||||||||||| ||||| |  |||||||||||||||||    
T  13575340 ctcggaacttgcatatgttatgcattgtccctaccaactgagctaaactcacgaggacaa 13575281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 33482166 - 33482213
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 316  Q
    |||| ||| |||||||||||||||||||||||||  ||||||||||||    
T  33482166 cttgcataaattatgcattgtccctatcaactaagctaaactcacgag 33482213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 8687913 - 8687859
Alignment:
Q  266 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    ||||||||||||||||| ||||||||||| ||| | | ||||| |||||||||||    
T  8687913 gatcttgtatatattatacattgtccctaccaattgagttaaattcacgaggaca 8687859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 8982610 - 8982561
Alignment:
Q  270 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||||||||||||||||||| | ||  |||| ||||||||||||||||||    
T  8982610 ttgtatatattatgcattgttcatactaactgaattaaactcacgaggac 8982561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 10601819 - 10601762
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacg 314  Q
    |||||| || |||||| |||||||||||||||||| || ||||| |||||| ||||||    
T  10601819 tgaatcccgaatcttgcatatattatgcattgtccataccaactgaattaagctcacg 10601762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 14303209 - 14303156
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||||||||| |||||||| || ||||| |  ||||||||||||||||||    
T  14303209 cttgtatatattatacattgtccataccaactgagctaaactcacgaggacaaa 14303156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 32223901 - 32223946
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    ||||||||||||||||| ||||||||| || ||| |||||||||||    
T  32223901 atatattatgcattgtctctatcaactgaactaagctcacgaggac 32223946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 33620942 - 33620889
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||||||||||||||||||| ||  |||| | |||||||||||| ||||||    
T  33620942 cttgtatatattatgcattgtccatactaactgagttaaactcacgaagacaaa 33620889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 1230683 - 1230731
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||||||||||| |||| ||||| | |||||||| ||||||||||    
T  1230683 atatattatgcattgttcctaccaactgagttaaactcgcgaggacaaa 1230731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 1243763 - 1243811
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||||||||||||  |||  |||| |||||||||||||||||||||    
T  1243763 atatattatgcattgtttctacaaactgaattaaactcacgaggacaaa 1243811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 1254463 - 1254511
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||||||||||||  |||  |||| |||||||||||||||||||||    
T  1254463 atatattatgcattgtttctacaaactgaattaaactcacgaggacaaa 1254511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 7968952 - 7969000
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactca 312  Q
    |||| |||| |||||||||||||||||| || ||||| |||||||||||    
T  7968952 cggaccttgcatatattatgcattgtccttaccaactgaattaaactca 7969000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 11709036 - 11708980
Alignment:
Q  263 tcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    ||||| |||| ||||||||||||||||||||| ||||| |  ||| |||||||||||    
T  11709036 tcggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 11708980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 12938944 - 12938972
Alignment:
Q  269 cttgtatatattatgcattgtccctatca 297  Q
    |||||||||||||||||||||||||||||    
T  12938944 cttgtatatattatgcattgtccctatca 12938972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 22948093 - 22948129
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaact 300  Q
    |||| |||| |||||||||||||||||||||||||||    
T  22948093 cggaccttgcatatattatgcattgtccctatcaact 22948129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 32555298 - 32555246
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| |||| ||||||||||||| || |||||||  |||||||||||||||||    
T  32555298 cttgcatattttatgcattgtccataccaactaagctaaactcacgaggacaa 32555246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 33445614 - 33445562
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    ||||||||||||||||||||| |||| ||||| |  ||| |||||||||||||    
T  33445614 cttgtatatattatgcattgttcctaccaactgagctaagctcacgaggacaa 33445562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 964746 - 964809
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    ||||||||||||||| |||||||||||||||||  ||||| ||| | |||| ||||||||||||    
T  964746 tgaatctcggatcttatatatattatgcattgtttctatcgactgagttaagctcacgaggaca 964809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 1285081 - 1285132
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacga 315  Q
    ||||||||| |||||||||||||||| |||||||||| | ||||||||||||    
T  1285081 cggatcttgcatatattatgcattgttcctatcaactgagttaaactcacga 1285132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 3584260 - 3584195
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||||| | |||| |||||||||||||||||| || ||||||| |||| ||| ||||||||||    
T  3584260 tgaatctcgtaccttgcatatattatgcattgtccttaccaactaagttaagctcgcgaggacaaa 3584195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 22267620 - 22267571
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 323  Q
    ||||||||||||||||| ||| ||||| | ||||||||||||||||||||    
T  22267620 atatattatgcattgtctctaccaactgagttaaactcacgaggacaaag 22267571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 24934794 - 24934749
Alignment:
Q  135 ttaatatgttgaatgcataatttttaagataaagttgctactttaa 180  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||    
T  24934794 ttaataagttgaatgcacaatttctaagataaagttgctactttaa 24934749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 3948099 - 3948051
Alignment:
Q  268 tcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 316  Q
    ||||| ||||||||||||||||| ||||||||| | |||||||||||||    
T  3948099 tcttgcatatattatgcattgtctctatcaactgagttaaactcacgag 3948051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 35222968 - 35222916
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| |||||| |||||||||||||||||||| |  |||||||||||||||||    
T  35222968 cttgcatatatcatgcattgtccctatcaactgacctaaactcacgaggacaa 35222916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 42829246 - 42829302
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| |||| ||||||||||||||||||||||||||| | | || ||||||||||||    
T  42829246 cggagcttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 42829302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 20762874 - 20762831
Alignment:
Q  279 ttatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||||||| |||||||||| || ||||||||||||||||||    
T  20762874 ttatgcattgttcctatcaactgaactaaactcacgaggacaaa 20762831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 30857292 - 30857241
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| |||||||||||||||||| || |||||||  ||||||||||||||||    
T  30857292 cttgcatatattatgcattgtccataccaactaagctaaactcacgaggaca 30857241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 1399217 - 1399155
Alignment:
Q  258 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    ||||||| || |||| |||||| ||||||||||| || ||||| | |||||||||||||||||    
T  1399217 gaatctcagaccttgcatatatcatgcattgtccataccaactgagttaaactcacgaggaca 1399155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 28479870 - 28479904
Alignment:
Q  266 gatcttgtatatattatgcattgtccctatcaact 300  Q
    |||||||||||||||||||||||||| ||||||||    
T  28479870 gatcttgtatatattatgcattgtccttatcaact 28479904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 5352384 - 5352323
Alignment:
Q  258 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||||||||| ||||||||||||||| ||||||| || ||||| |  ||| |||||||||||    
T  5352384 gaatctcggaccttgtatatattatgtattgtccttaccaactgagctaagctcacgaggac 5352323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 37307885 - 37307922
Alignment:
Q  263 tcggatcttgtatatattatgcattgtccctatcaact 300  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  37307885 tcggatcttgcatatattatgcattgttcctatcaact 37307922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 8237637 - 8237701
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| ||||||  |||||||||||||||||||||| || ||||  || ||| |||||||||||||    
T  8237637 tgaacctcggactttgtatatattatgcattgtccttaccaacagaactaagctcacgaggacaa 8237701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 9819563 - 9819615
Alignment:
Q  266 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 318  Q
    ||||||| |||||||||||||||| |||| ||||| |  ||||||||||||||    
T  9819563 gatcttgcatatattatgcattgttcctaccaactgagataaactcacgagga 9819615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 10721488 - 10721540
Alignment:
Q  266 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 318  Q
    ||||||| |||||||||||||||| |||| ||||| |  ||||||||||||||    
T  10721488 gatcttgcatatattatgcattgttcctaccaactgagataaactcacgagga 10721540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 19599194 - 19599138
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| |||| |||||||||||||||||| || ||||| | |||||||||| ||||||    
T  19599194 cggaccttgcatatattatgcattgtccataccaactgagttaaactcaccaggaca 19599138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 29461843 - 29461883
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacg 314  Q
    ||||||||||||||||||||| ||||| | |||||||||||    
T  29461843 atatattatgcattgtccctaccaactgagttaaactcacg 29461883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 41527611 - 41527555
Alignment:
Q  262 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 318  Q
    |||||| |||| |||||||||||||||||| || |||||||  ||| ||||||||||    
T  41527611 ctcggaccttgcatatattatgcattgtccataccaactaagctaagctcacgagga 41527555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 43681007 - 43681059
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| |||| |||||||||||||| ||||||| | |||||||||||| |||||    
T  43681007 cttgcatattttatgcattgtcccaatcaactgagttaaactcacgatgacaa 43681059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 2692271 - 2692228
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaact 300  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  2692271 tgaatctcggatcttgcatatattatgcattgtccatatcaact 2692228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 7927738 - 7927694
Alignment:
Q  275 tatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||||||||||||||||||||||||| || ||| |||||||||||    
T  7927738 tatattatgcattgtccctatcaactgaactaagctcacgaggac 7927694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 28478663 - 28478711
Alignment:
Q  133 ttttaatatgttgaatgcataatttttaagataaagttgctactttaag 181  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||    
T  28478663 ttttaatatgttgaatacacaatttctaagataaagtttctactttaag 28478711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 29791118 - 29791166
Alignment:
Q  133 ttttaatatgttgaatgcataatttttaagataaagttgctactttaag 181  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||    
T  29791118 ttttaatatgttgaatacacaatttctaagataaagtttctactttaag 29791166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 12412321 - 12412270
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| ||||||||||||||||| ||| ||||||| |||| ||||||||||||    
T  12412321 cttgcatatattatgcattgtctctaccaactaagttaagctcacgaggaca 12412270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 8809362 - 8809300
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||| ||||||||||| ||||||||||||||||   |||||| | || |||||||||||||||    
T  8809362 tgaacctcggatcttgcatatattatgcattgtttttatcaattgaactaaactcacgaggac 8809300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 12336347 - 12336393
Alignment:
Q  273 tatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    ||||||||||||||||||| ||| |||| | ||||||||||||||||    
T  12336347 tatatattatgcattgtccatattaactgagttaaactcacgaggac 12336393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 21885023 - 21884981
Alignment:
Q  277 tattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||    
T  21885023 tattatgcattgtccctatcaattaagttaaacttacgaggac 21884981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 2445345 - 2445292
Alignment:
Q  267 atcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    ||||||||||||||||||||||| | |||||||| | |||| || |||||||||    
T  2445345 atcttgtatatattatgcattgttcatatcaactgagttaagcttacgaggaca 2445292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 3373396 - 3373449
Alignment:
Q  267 atcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||||| |||||||||||||||||| |||||||| | ||||| |||||| ||||    
T  3373396 atcttgcatatattatgcattgtccatatcaactgagttaaattcacgaagaca 3373449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 31971585 - 31971520
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||| |||||| |||| |||||||||||||||||| || ||||| | |||| || |||||||||||    
T  31971585 tgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagcttacgaggacaaa 31971520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 11520627 - 11520583
Alignment:
Q  276 atattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    ||||||||||||||| ||| ||||| || ||||||||||||||||    
T  11520627 atattatgcattgtcgctaccaactgaactaaactcacgaggaca 11520583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 14552381 - 14552333
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgagg 317  Q
    ||||||||||||||||||| || ||||||||| | |||| |||||||||    
T  14552381 cttgtatatattatgcattatctctatcaactgagttaagctcacgagg 14552333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 15291707 - 15291759
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| ||||||||| |||||||| || ||||||| |||| |||||||||||||    
T  15291707 cttgcatatattattcattgtccttaccaactaagttaagctcacgaggacaa 15291759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 24373727 - 24373779
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| ||||||||||||||||| ||| ||| | | ||||||||||||||||||    
T  24373727 cttgcatatattatgcattgtctctaccaattgagttaaactcacgaggacaa 24373779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 28231437 - 28231473
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaact 300  Q
    |||| |||| |||||||||||||||||||||||||||    
T  28231437 cggaccttgcatatattatgcattgtccctatcaact 28231473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 29694677 - 29694722
Alignment:
Q  134 tttaatatgttgaatgcataatttttaagataaagttgctactttaag 181  Q
    ||||||||||||||  |||||||||||| |||||||| ||||||||||    
T  29694677 tttaatatgttgaa--cataatttttaaaataaagtttctactttaag 29694722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 40446027 - 40445976
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| |||||||||||||||||| |||||||| | |||||||||||||||||    
T  40446027 cttgcatatattatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 1082224 - 1082289
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||| || ||| |||| |||| ||||    
T  1082224 tgaatctcggaccttgtatatattatacattgtccctaccaactgaactaagctcatgagggcaaa 1082289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 8545001 - 8545061
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaaga 324  Q
    |||| |||| |||||||||||||||||| |||||||| | |||| |||||||| |||||||    
T  8545001 cggaccttgcatatattatgcattgtccttatcaactgagttaagctcacgagaacaaaga 8545061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 10531579 - 10531531
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||||||||||||||||| || |||||||| ||| ||||||||||||||    
T  10531579 atatattatgcattgtccatagcaactaaactaagctcacgaggacaaa 10531531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 17046385 - 17046331
Alignment:
Q  262 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 316  Q
    ||||||||||| |||||||||||||||||| || ||||| | |||| ||||||||    
T  17046385 ctcggatcttgcatatattatgcattgtccataccaactgagttaagctcacgag 17046331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 28447532 - 28447486
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||||||||||||||||||||  |||| | |||||||||||||||||    
T  28447532 atatattatgcattgtccctactaactgagttaaactcacgaggaca 28447486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 34436895 - 34436837
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaagacat 327  Q
    |||| ||||||||||||||||||||| ||||| |  ||| |||||||||||| ||||||    
T  34436895 cttgcatatattatgcattgtccctaccaactgagctaagctcacgaggacagagacat 34436837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 4432155 - 4432110
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||||||||||||||||| |||||||| | ||||||| ||||||||    
T  4432155 atatattatgcattgtccttatcaactgagttaaacttacgaggac 4432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 7861018 - 7861051
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaa 302  Q
    |||| |||||||||||||||||||||||||||||    
T  7861018 cttgcatatattatgcattgtccctatcaactaa 7861051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 8885246 - 8885311
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||||| | |||| |||| |||||||||||||| ||||| | | ||| |||||||||||||||    
T  8885246 tgaatctcgtaccttgcatattttatgcattgtcccaatcaaatgagttatactcacgaggacaaa 8885311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 42663222 - 42663271
Alignment:
Q  270 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||||||||||||| ||||| |||| ||||| | ||||||||||||||||    
T  42663222 ttgtatatattatgtattgttcctaacaactgagttaaactcacgaggac 42663271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 2523842 - 2523798
Alignment:
Q  137 aatatgttgaatgcataatttttaagataaagttgctactttaag 181  Q
    |||| |||||||||||||||| |||||||||||| || |||||||    
T  2523842 aataagttgaatgcataatttctaagataaagttactgctttaag 2523798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 2642785 - 2642825
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacg 314  Q
    |||||||||||||| |||||| ||||||| |||||||||||    
T  2642785 atatattatgcattatccctaccaactaagttaaactcacg 2642825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 6237734 - 6237782
Alignment:
Q  267 atcttgtatatattatgcattgtccctatcaactaaattaaactcacga 315  Q
    |||||| ||||||||||||||||||||  ||||| | ||||||||||||    
T  6237734 atcttgcatatattatgcattgtccctgccaacttagttaaactcacga 6237782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 10515597 - 10515545
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| ||||||||| |||||||| |  ||||||| ||||||||||||||||||    
T  10515597 cttgcatatattattcattgtccattccaactaagttaaactcacgaggacaa 10515545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 13484542 - 13484574
Alignment:
Q  258 gaatctcggatcttgtatatattatgcattgtc 290  Q
    ||||||| |||||||||||||||||||||||||    
T  13484542 gaatctcagatcttgtatatattatgcattgtc 13484574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 14124347 - 14124307
Alignment:
Q  267 atcttgtatatattatgcattgtccctatcaactaaattaa 307  Q
    ||||||||||||||||||||||||| || ||||||| ||||    
T  14124347 atcttgtatatattatgcattgtccttaccaactaagttaa 14124307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 14870035 - 14869991
Alignment:
Q  270 ttgtatatattatgcattgtccctatcaactaaattaaactcacg 314  Q
    ||||||||||||||||||||||||| ||||| | |||| ||||||    
T  14870035 ttgtatatattatgcattgtccctagcaactgagttaagctcacg 14869991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 17862018 - 17861974
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgagga 318  Q
    ||||||||||||||||||||| ||||| |  ||||||||||||||    
T  17862018 atatattatgcattgtccctaccaactgagctaaactcacgagga 17861974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 34903400 - 34903444
Alignment:
Q  137 aatatgttgaatgcataatttttaagataaagttgctactttaag 181  Q
    |||| |||||||||| |||||| ||||||||||| ||||||||||    
T  34903400 aataagttgaatgcacaattttcaagataaagttactactttaag 34903444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 7827547 - 7827500
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||    
T  7827547 atatattatgcattgtccatatcaactgagttaaactcacgaggacaa 7827500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 7829935 - 7829888
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||    
T  7829935 atatattatgcattgtccatatcaactgagttaaactcacgaggacaa 7829888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 32753872 - 32753821
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||||||||||||||||||||||||||||||| | | || ||||||||||||    
T  32753872 cttgtatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 32753821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 48924337 - 48924392
Alignment:
Q  270 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaagac 325  Q
    ||||||||||||| ||||||||||| |||||||  |||||||||||||||| ||||    
T  48924337 ttgtatatattatacattgtccctaccaactaagctaaactcacgaggacagagac 48924392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 48517715 - 48517669
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacga 315  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||||    
T  48517715 cttgtatatattatgcattgttcctatcaactgagttaaactcacga 48517669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 12976619 - 12976664
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacg 314  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||    
T  12976619 cttgcatatattatgcattgtccctatcaactgagttaaactcacg 12976664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 28093398 - 28093346
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| |||||||||||||||||| || ||||| ||||||||||||| ||||||    
T  28093398 cttgcatatattatgcattgtccataccaactgaattaaactcacggggacaa 28093346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 7738718 - 7738660
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||| |||| |||| |||||||||||||||| ||||| | |||| ||||||||||||||    
T  7738718 cggaccttgcatattttatgcattgtccctaccaactgagttaagctcacgaggacaaa 7738660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 10922320 - 10922370
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacg 314  Q
    ||||||||| ||||||||||||||||||||| ||||| | |||| ||||||    
T  10922320 cggatcttgcatatattatgcattgtccctaccaactgagttaagctcacg 10922370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 39869817 - 39869867
Alignment:
Q  262 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactca 312  Q
    |||||| ||||||||||||||||||||||| || ||||| | |||||||||    
T  39869817 ctcggaccttgtatatattatgcattgtccttaccaactgagttaaactca 39869867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 46226089 - 46226143
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 318  Q
    |||| |||| ||||||||||||||||||||| ||| | | |||||||||||||||    
T  46226089 cggaccttgcatatattatgcattgtccctaccaattgagttaaactcacgagga 46226143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 7464513 - 7464558
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    ||||||||||||||||||||| ||||| | |||| |||||||||||    
T  7464513 atatattatgcattgtccctaccaactgagttaagctcacgaggac 7464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 8139759 - 8139710
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 318  Q
    |||| |||||||||||||||||| || |||||||| ||| ||||||||||    
T  8139759 cttgcatatattatgcattgtccataccaactaaactaagctcacgagga 8139710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 9598495 - 9598430
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    ||||||||||| |||| |||| |||| ||||||||| | ||||| || ||| ||||||||||||||    
T  9598495 tgaatctcggaccttgcatattttatacattgtcccaaccaactgaactaagctcacgaggacaaa 9598430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 22462351 - 22462302
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 323  Q
    |||||||||||||||||| |||||||| | |||| |||||| ||||||||    
T  22462351 atatattatgcattgtccttatcaactgagttaagctcacggggacaaag 22462302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 23332689 - 23332640
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 323  Q
    |||||||||||||||| | |||||||||| ||||  ||||||||||||||    
T  23332689 atatattatgcattgttcatatcaactaagttaagttcacgaggacaaag 23332640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 28052399 - 28052452
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 322  Q
    |||| ||| ||||||| ||||||||||||||| || ||||||||| ||||||||    
T  28052399 cttggataaattatgcgttgtccctatcaactgaactaaactcacaaggacaaa 28052452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 31110669 - 31110632
Alignment:
Q  133 ttttaatatgttgaatgcataatttttaagataaagtt 170  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  31110669 ttttaatatctcgaatgcataatttttaagataaagtt 31110632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 38388019 - 38387966
Alignment:
Q  266 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    ||||||| ||||||||||||||||| ||||||||| |  ||| |||||||||||    
T  38388019 gatcttgcatatattatgcattgtcactatcaactgagctaagctcacgaggac 38387966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 7824851 - 7824799
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| |||||||||| ||||||  |||||||| | ||||||||||||||||||    
T  7824851 cttgcatatattatgtattgtctatatcaactgagttaaactcacgaggacaa 7824799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 24145447 - 24145411
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaact 300  Q
    |||| |||||||||||||||||||||||||| |||||    
T  24145447 cggaccttgtatatattatgcattgtccctaccaact 24145411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 35126283 - 35126331
Alignment:
Q  266 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacg 314  Q
    ||||||| |||||||||||||| |||||| ||||| | |||||||||||    
T  35126283 gatcttgcatatattatgcattatccctaccaactgagttaaactcacg 35126331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 37921020 - 37921064
Alignment:
Q  274 atatattatgcattgtccctatcaactaaattaaactcacgagga 318  Q
    |||||||||||||| |||||||||||| |  ||||||||||||||    
T  37921020 atatattatgcattatccctatcaactgagctaaactcacgagga 37921064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 41168155 - 41168207
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    ||||||||||||||||||||| |||||||||  | |||| || ||||||||||    
T  41168155 cttgtatatattatgcattgttcctatcaaccgagttaagcttacgaggacaa 41168207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 22967 - 22904
Alignment:
Q  257 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    |||| |||||| |||| |||| ||||||||||| | ||||||||||| ||| ||||||||||||    
T  22967 tgaacctcggaccttgcatattttatgcattgttcatatcaactaaactaagctcacgaggaca 22904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 4510 - 4463
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 316  Q
    |||| ||| |||||||||||||||||||||||||  ||||||||||||    
T  4510 cttgcataaattatgcattgtccctatcaactaagctaaactcacgag 4463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 99081 - 99031
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    |||| ||||||||||||||||||||||||||| | | || |||||||||||    
T  99081 cttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggac 99031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 63905 - 63856
Alignment:
Q  270 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    ||||||||||||| ||||||||||| ||||| |  |||||||||||||||    
T  63905 ttgtatatattatacattgtccctaccaactgagctaaactcacgaggac 63856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 71237 - 71188
Alignment:
Q  270 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 319  Q
    ||||||||||||| ||||||||||| ||||| |  |||||||||||||||    
T  71237 ttgtatatattatacattgtccctaccaactgagctaaactcacgaggac 71188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 1651 - 1599
Alignment:
Q  269 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 321  Q
    |||| |||||||||| ||||||||||||||||||  ||| ||||| |||||||    
T  1651 cttggatatattatgtattgtccctatcaactaacctaagctcacaaggacaa 1599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 31934 - 31970
Alignment:
Q  264 cggatcttgtatatattatgcattgtccctatcaact 300  Q
    |||| |||| |||||||||||||||||||||||||||    
T  31934 cggaccttgcatatattatgcattgtccctatcaact 31970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 119606 - 119562
Alignment:
Q  276 atattatgcattgtccctatcaactaaattaaactcacgaggaca 320  Q
    ||||||| ||||||||||||||||| | |||| ||||||||||||    
T  119606 atattatacattgtccctatcaactgagttaagctcacgaggaca 119562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University