View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2698_low_20 (Length: 235)
Name: NF2698_low_20
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2698_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 5642958 - 5643159
Alignment:
| Q |
15 |
caaaggccagtggacatagctccacacccagaatacaaatctaataaagtccactctctatcagattctttaattttagacaatccttcttcagccacat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5642958 |
caaaggccagtggacatagctccacacccagaatacaaatctaataaagtccactctctatcagattctttaattttagacaatccttcttcagccacat |
5643057 |
T |
|
| Q |
115 |
tattatcagttgcacaggcattggacccagattcacttgatattgttgaagtctcactttctattttgtcagtctcgctttctatttttgaaggttctga |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5643058 |
tattatcagttgcacatgcattggacccagattcacttgatattgttgaagtctcactttctattttgtcagtctcgctttctatttttgaaggttctga |
5643157 |
T |
|
| Q |
215 |
at |
216 |
Q |
| |
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|| |
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| T |
5643158 |
at |
5643159 |
T |
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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 31942709 - 31942879
Alignment:
| Q |
12 |
aagcaaaggccagtggacatagctccacacccagaatacaaatctaataaagtccactc---tctatcagattctttaattttagacaatccttcttcag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |||||||||||||| || || ||||| | |
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| T |
31942709 |
aagcaaaggccagtggacatagctccacacccagaatacaaatccagtaaagtccactcgcgcctattagattctttaatttgagttgatttttctttaa |
31942808 |
T |
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| Q |
109 |
ccacattattatcagttgcacaggcattggacccagattcacttgatattgttgaagtctcactttctatt |
179 |
Q |
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|| | || |||||||||||| | |||||||||||||||||||||| | ||||||||||| ||||||||| |
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| T |
31942809 |
cccctttcttatcagttgcatggacattggacccagattcacttgaaagtgttgaagtcttgctttctatt |
31942879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 9393079 - 9393249
Alignment:
| Q |
12 |
aagcaaaggccagtggacatagctccacacccagaatacaaatctaataaagtccactc---tctatcagattctttaattttagacaatccttcttcag |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |||||||||||||| | | ||||| | |
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| T |
9393079 |
aagcaaaggccagtggacatagctccacacccagaatacaaatccagtaaagtccactcaggcctattagattctttaatttgtgttgacttttctttaa |
9393178 |
T |
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| Q |
109 |
ccacattattatcagttgcacaggcattggacccagattcacttgatattgttgaagtctcactttctatt |
179 |
Q |
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|| | || ||||||||||||| | |||||||||||||||||||||| | |||||||||||| ||||||||| |
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| T |
9393179 |
ccccttttttatcagttgcacggacattggacccagattcacttgaaagtgttgaagtctcgctttctatt |
9393249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 1340906 - 1341079
Alignment:
| Q |
12 |
aagcaaaggccagtggacatagctccacacccagaatacaaatctaataaagtccactc---tctatcagattctttaattttagacaatccttcttcag |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| | |||||||||||| | || ||||| | |
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| T |
1340906 |
aagcaaaggccagtggacatagctccacacccagaatacaaatccagtaaagtccactcaggcctattacattctttaatttgacttgatttttctttaa |
1341005 |
T |
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| Q |
109 |
ccacattattatcagttgcacaggcattggacccagattcacttgatattgttgaagtctcactttctattttg |
182 |
Q |
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|| |||| ||||||| |||| | ||||| |||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
1341006 |
ccgcatttttatcagctgcatggacattgtacccagattcacttgaaagtgttgaagtctcactttctattttg |
1341079 |
T |
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