View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2698_low_3 (Length: 563)
Name: NF2698_low_3
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2698_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 12514304 - 12513760
Alignment:
| Q |
1 |
ggaaaccattaagaaaataaattatatttaaactggtttctcatttgatccatattgccaaccttactataaatataatcactaaggtttactaacatat |
100 |
Q |
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| T |
12514304 |
ggaaaccattaagaaaataaattatatttaaactggtttctcatttgatccatattgccaaccttactataaatataatcactaaggtttactaacatat |
12514205 |
T |
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| Q |
101 |
ttcccccatgcctatcatgctgttttactaactagtacttactatttaactcactaagaggttgtctatcatgtcatttgtaagtcttatgatgattgta |
200 |
Q |
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| T |
12514204 |
ttcccccatgcctatcatgctgttttactaactagtacttactatttaactcactaagaggttgtctatcatgtcatttgtaagtcttatgatgattgta |
12514105 |
T |
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| Q |
201 |
tataattgaatttaaatatatgcaacaggggatgctgtgaaactttttgctggtgagagttactcgtctgtatgtgctttcgtgaactaccgagtgaaga |
300 |
Q |
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| T |
12514104 |
tataattgaatttaaatatatgcaacaggggatgctgtgaaactttttgctggtgagagttactcgtctgtatgtgctttcgtgaactaccgagtgaaga |
12514005 |
T |
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| Q |
301 |
aacttgcatataattgtattcgtgtagtacatcataataggtttgctttatttatttactttaatttcgctaattctgggcctttggcttttcttattta |
400 |
Q |
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| T |
12514004 |
aacttgcatataattgtattcgtgtagtacatcataataggtttgctttatttatttactttaatttcgctaattctgggcctttggcttttcttattct |
12513905 |
T |
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| Q |
401 |
cttgccatcacttttctcattcatttattattacttgtagaacatcacattttgattatattatcacttgaatgatttcgaatgttaaacctgtgttaca |
500 |
Q |
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| T |
12513904 |
cttgccatcacttttctcattcatttattattacttgtagaacatcacattttgattatattatcacttgattgatttagaatggtaaacctgtgttaca |
12513805 |
T |
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| Q |
501 |
ccaaatatataagtaaaagagatatggttttaatcagcattaact |
545 |
Q |
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| T |
12513804 |
ccaaatatataagtaaaagagatatggttttaatcagcattaact |
12513760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 206 - 433
Target Start/End: Complemental strand, 12485407 - 12485182
Alignment:
| Q |
206 |
ttgaatttaaatatatgcaacaggggatgctgtgaaactttttgctggtgagagttactcgtctgtatgtgctttcgtgaactaccgagtgaagaaactt |
305 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||| | |||||| |||||||||||| ||||||||||||| |||||||||||| |
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| T |
12485407 |
ttgaatttaaatatatgcaacagggaatgctgtgagactttttgctggtgaaaattactcatctgtatgtgctctcgtgaactaccgggtgaagaaactt |
12485308 |
T |
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| Q |
306 |
gcatataattgtattcgtgtagtacatcataataggtttgctttatttatttactttaatttcgctaattctgggcctttggcttttcttatttacttgc |
405 |
Q |
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| T |
12485307 |
gcatataattgtattcgtgcagtacatcataataggtttgctttacttatttattttaa-ttcactaattttgggcttttggcttttcttattctcttgc |
12485209 |
T |
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| Q |
406 |
catcacttttctcattcatttattatta |
433 |
Q |
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| T |
12485208 |
cgttactttcctc-ttcatttattatta |
12485182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 12485679 - 12485583
Alignment:
| Q |
104 |
ccccatgcctatcatgct-gttttactaactagtacttactatttaactcactaagaggttgtctatcatgtcatttgtaagtcttatgatgattgt |
199 |
Q |
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||||||||||||||||| |||||| ||||||||| | ||||||||||| |||||||||||| |||||||| | | |||||| || |||||||||| |
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| T |
12485679 |
ccccatgcctatcatgcccgttttattaactagtaataactatttaactaactaagaggttgcctatcatgccgtctgtaagcctattgatgattgt |
12485583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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