View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2698_low_4 (Length: 524)
Name: NF2698_low_4
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2698_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 52070656 - 52071165
Alignment:
| Q |
1 |
tacgttaaacatcgttccatgagatttccaagtccacaaacatgaaatgaaagacttcatactatcttagctattttattatttttggtaaccactaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52070656 |
tacgttaaacatcgttccatgagatttccaagtccacaaacatgaaatgaaagacttcatactatcttagctattttattatttttggtaaccactaacc |
52070755 |
T |
|
| Q |
101 |
attggtggtagcaatattaaaccgcagaatatatatttacttattgaaggatagtagcacgaaatcaaaataaacaaataaaaagcttagagtggctaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52070756 |
attggtggtagcaatattaaaccgcaaaatatatatttacttattgaaggatagtagcacgaaatcaaaataaacaaataaaaagcttagagtggctaat |
52070855 |
T |
|
| Q |
201 |
ttaattgagtaaaaaggatgtttaagaaggacatctaattgtaactacaaagtctagagtggttaatttcattctccaagtacatcctcactggattcga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52070856 |
ttaattgagtaaaaaggatgtttaagaaggacatctaattgtaactacaaagtctagagtggttaatttcattctccaagtacatcctcactggattcga |
52070955 |
T |
|
| Q |
301 |
gaaaagaagtgaaataatgaaggttgttagtcacatttttctcatcaacaaagctacattctgtccagttcttgagaatctcatccgaaaacataggagt |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52070956 |
gaaaagaagtaaaataatgaaggttgttagtcacatttttctcatcaacaaaactacattctgtccagttcttgagaatctcatccgaaaacataggagt |
52071055 |
T |
|
| Q |
401 |
ctggtcagaacaaggtgacaataactcattgtaatcaaaattgcatgcagttgaaaaatccgagttcaaaagttcggataagctaatatcatgatctccc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52071056 |
ctggtcagaacaaggtgacaataactcattgtaatcaaaattgcatgcagttgaaaaatccgagttcaaaagttcggataagctaatatcatgatctccc |
52071155 |
T |
|
| Q |
501 |
atgttaaaat |
510 |
Q |
| |
|
|||||||||| |
|
|
| T |
52071156 |
atgttaaaat |
52071165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University