View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2698_low_5 (Length: 468)
Name: NF2698_low_5
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2698_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 30349877 - 30349432
Alignment:
| Q |
18 |
catgatgttgatgggagatgttgtttcatgttttgtctgtaaagattgagaggctacagagagaagctcaggaggaatgagagaatcccatcccctcatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30349877 |
catgatgttgatgggagatgttgtttcatgttttgtctgtaaagattgagaggctacagagagaagctcaggaggaatgagagaatcccatcccctcatt |
30349778 |
T |
|
| Q |
118 |
gggtcatgagcagcacatgaggttgtaacaccatcccaacctatgtgtgtcacatgttgtacatctgttggacaccctatttccatctccatttctgctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30349777 |
gggtcatgagcagcacatgaggttgtaacaccatcccaacctatgtgtgtcacatgttgtacatctgttggacaccctatttccatgtccatttctgctt |
30349678 |
T |
|
| Q |
218 |
cttctaagtcctcttctttctccactgcaattaaacatnnnnnnnttgaattccatgaaaaattaagacttaaatatattttttagttacaagcaaatnn |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30349677 |
cttctaagtcctcttctttctccactgcaattaaacataaaaaagttgaattccatgaaaaattaagacttaaatatattttttagttacaaacaaataa |
30349578 |
T |
|
| Q |
318 |
nnnnnttcgattttaattcctacaattttatttttagtatgacatgtatataaaaattaaatgtaagtgcatattagtattgtcggataagatcaataat |
417 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30349577 |
aaaaattcgattttaattcctaaaattttatttttagtatgacatgtttataaaaattaaatataagtgcatattagtattatcggataagatcaataat |
30349478 |
T |
|
| Q |
418 |
gtcaaactgactttaatttgcattcatcttttttctttcttctcac |
463 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
30349477 |
gttaaactgactttaatttgcattcatctttttcctttcttttcac |
30349432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University