View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2698_low_8 (Length: 390)
Name: NF2698_low_8
Description: NF2698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2698_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 148 - 351
Target Start/End: Complemental strand, 15858643 - 15858440
Alignment:
| Q |
148 |
tatatttctctcgttcgaaatataagttccatgtataaaatatttatctatcatcatgagttttttgagaggctttatttatcataaattatttgttaat |
247 |
Q |
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| T |
15858643 |
tatatttctctcgttcgaaatataagttccatttataaaatatttatctatcatcatgagttttttgagaggctttatctatcataaattatttgttaat |
15858544 |
T |
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| Q |
248 |
attttttctataggtttcttccaccgaagacaatcatatttgcggtattacagagaataaatttgtgataccttaccctcttgggtttgaaacattggtt |
347 |
Q |
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| T |
15858543 |
attttttctataggtttcttccatcgaaggtaatcatatttgcggtattacagagaataaatttgtgataccttaccctcttgggtttgaaacattggtt |
15858444 |
T |
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| Q |
348 |
tatc |
351 |
Q |
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|||| |
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| T |
15858443 |
tatc |
15858440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 15859019 - 15858887
Alignment:
| Q |
16 |
agaagatcaatagatttatttatatatta---cttagcgatggtattcgtagatcaataacaagattcaaattcaagtcttcataaaaactgaacttaat |
112 |
Q |
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| T |
15859019 |
agaagaccaataggtttatttatatattattacttagcgctggtattcttagatcaataataagattcaaattcaagtcctcaagaaaattgaacttaat |
15858920 |
T |
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| Q |
113 |
ccttctcagccggatcaacctatattgacacat |
145 |
Q |
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| T |
15858919 |
ccttcccaaccggaacaacctatattgacacat |
15858887 |
T |
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