View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2699_low_2 (Length: 211)
Name: NF2699_low_2
Description: NF2699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2699_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 7048029 - 7048171
Alignment:
| Q |
65 |
taagcaaaagctataagcagaagccataagcaattagaagctatacacaaaaacagaagctataaacaagtaggagctgtaatcaaaagctatgagcaga |
164 |
Q |
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| T |
7048029 |
taagcaaaagctataagcagaagccataagcaattagaagctatacacaaaaacagaagctataaacaagtaggagctgtaatcaaaagctatgagcaga |
7048128 |
T |
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| Q |
165 |
agtgataaacaattagaagctataaacagttagaagcaaaagc |
207 |
Q |
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| T |
7048129 |
agtgataaacaattagaagccataaacagttagaagcaaaagc |
7048171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 7048330 - 7048410
Alignment:
| Q |
17 |
ataagcaatgagaagctataaacagttagaagccataagcagaagctgtaagcaaaagctataagcagaagccataagcaa |
97 |
Q |
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| T |
7048330 |
ataagcaattagaaggtataaacagttagaagccataagcagaagctgtaagcaaaagctataagccgaagcgataagcaa |
7048410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 7048181 - 7048242
Alignment:
| Q |
12 |
aagctataagcaatgagaagctataaacagttagaagccataagcagaagctgtaagcaaaa |
73 |
Q |
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| T |
7048181 |
aagctataagcaatgagaagctataaacagttagaagccataagtagaagctgtaagcaaaa |
7048242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 7042640 - 7042696
Alignment:
| Q |
72 |
aagctataagcagaagccataagcaattagaagctatacacaaaaacagaagctataa |
129 |
Q |
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| T |
7042640 |
aagctataagcagaagccgtgagcaat-agaagctatacacaaaaacagaagttataa |
7042696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 7042561 - 7042605
Alignment:
| Q |
121 |
aagctataaacaagtaggagctgtaatcaaaagctatgagcagaa |
165 |
Q |
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| T |
7042561 |
aagctataaacaactaggagctgtaagcaaaagctatgagcagaa |
7042605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 7047986 - 7048025
Alignment:
| Q |
161 |
cagaagtgataaacaattagaagctataaacagttagaag |
200 |
Q |
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|||||| |||||| |||||||||||||||||||||||||| |
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| T |
7047986 |
cagaagcgataaagaattagaagctataaacagttagaag |
7048025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 7048162 - 7048205
Alignment:
| Q |
66 |
aagcaaaagctataagcagaagccataagcaattagaagctata |
109 |
Q |
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| T |
7048162 |
aagcaaaagctataagccgaagctataagcaatgagaagctata |
7048205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 2924230 - 2924144
Alignment:
| Q |
95 |
caattagaagctatacacaaaaacagaagctataaacaagtaggagctgtaatcaaaagctatgagcagaagtgataaacaattaga |
181 |
Q |
| |
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||||||||||||||| |||||| | ||||||||||||| ||| ||| ||| ||||| |||| || ||||| ||||||||||||| |
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| T |
2924230 |
caattagaagctataagcaaaaagataagctataaacaattagaggctataagcaaaacctataagtagaagctataaacaattaga |
2924144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 7048165 - 7048218
Alignment:
| Q |
148 |
caaaagctatgagcagaagtgataaacaattagaagctataaacagttagaagc |
201 |
Q |
| |
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|||||||||| ||| |||| |||| |||| ||||||||||||||||||||||| |
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| T |
7048165 |
caaaagctataagccgaagctataagcaatgagaagctataaacagttagaagc |
7048218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 9171939 - 9171991
Alignment:
| Q |
113 |
aaaaacagaagctataaacaagtaggagctgtaatcaaaagctatgagcagaa |
165 |
Q |
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||||||| ||||||||||||| ||| |||| ||||||||| |||| ||||||| |
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| T |
9171939 |
aaaaacaaaagctataaacaattagaagctataatcaaaacctataagcagaa |
9171991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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