View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700-Insertion-1 (Length: 702)

Name: NF2700-Insertion-1
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700-Insertion-1
NF2700-Insertion-1
[»] scaffold0352 (1 HSPs)
scaffold0352 (7-702)||(13103-13802)
[»] chr2 (2 HSPs)
chr2 (366-607)||(8353347-8353588)
chr2 (373-607)||(16182255-16182489)
[»] chr1 (1 HSPs)
chr1 (373-607)||(23467743-23467979)
[»] chr8 (1 HSPs)
chr8 (373-607)||(5705626-5705860)
[»] chr3 (2 HSPs)
chr3 (373-607)||(2889560-2889794)
chr3 (442-489)||(20591669-20591716)
[»] chr5 (2 HSPs)
chr5 (368-611)||(40290761-40291000)
chr5 (466-603)||(20218286-20218426)
[»] chr4 (4 HSPs)
chr4 (236-332)||(11664967-11665063)
chr4 (368-607)||(17792208-17792447)
chr4 (540-607)||(7860645-7860712)
chr4 (442-489)||(9102636-9102683)
[»] chr6 (2 HSPs)
chr6 (468-607)||(3593785-3593924)
chr6 (442-484)||(22818950-22818992)


Alignment Details
Target: scaffold0352 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 7 - 702
Target Start/End: Original strand, 13103 - 13802
Alignment:
Q  7 aattttataattcgaaatccatttataatgtgannnnnnnnagccatggtcgttttagctcaattgaaacgtgattaaccacttttttcataattttaaa 106  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13103 aattttataattcgaaatccatttataatgtgattttttttagccatggtcgttttagctcaattgaaacgtgattaaccacttttttcataattttaaa 13202  T
Q  107 tgtgcggattctagaattcgaacaacnnnnnnngtcatttttacacaaccaaatttataatttgagaactctcatacatgttttgatagttcctgtaatc 206  Q
    |||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13203 tgtgcggattcttgaattcgaacaacaaaaaaagtcatttttacacaaccaaatttataatttgagaactctcatacatgttttgatagttcctgtaatc 13302  T
Q  207 tatcaaatcaataaagattagtatacaacatacaaaatcgcaagcataagtttagtcacactcaaaagaacatctcaatttgatgttgtagaaagttgac 306  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13303 tatcaaatcaataaagattagtatacaacatacaaaattgcaagcataagtttagtcacactcaaaagaacatctcaatttgatgttgtagaaagttgac 13402  T
Q  307 ataagttattgcttcatctatcatctttgtagnnnnnnnnnnnnnngtattctataatgatttttgaataatatttaccgactaaaggttcacattagat 406  Q
    ||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13403 ataagttattgcttcatctatcatctttgtagttttttttttttttgtattctataatgatttttgaataatatttaccgactaaaggttcacattagat 13502  T
Q  407 catattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacacatgttgaacattatatcgagtggtgttgttgatt 506  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13503 tatattcaatttcatagttgaaaccaatcagtttgttataagagtggctactatataatgatacacatgttgaacattgtatcgagtggtgttgttgatt 13602  T
Q  507 catggttgcaagtacgaaatcaaa-ttttataacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaacat 605  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13603 cgtggttgcaagtacgaaatcaaatttttataacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaacat 13702  T
Q  606 ttgt---ttcagatctatactgattcaaatatatttcataagaacggagttaaaattgtccaagatgcaaatataattttagaactcgttgaagcaggtg 702  Q
    ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13703 ttgtttattcagatctatactgattcaaatatatttcataagaacggagttaaaattgtccaagatgcaaatataattttagaactcgttgaagcaggtg 13802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 366 - 607
Target Start/End: Complemental strand, 8353588 - 8353347
Alignment:
Q  366 atttttgaataatatttaccgactaaaggttcacattagatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataat 465  Q
    ||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||  |||  ||  ||||| |||||||| ||||| || |||| ||||||    
T  8353588 atttttgaatagtatttaccgactaaacggtcacattggatcatattcaatttccgagtcaaaggcaatctgtttgttacgagagcggatactttataat 8353489  T
Q  466 gatacacatgttgaacattatatcgagtggtgttgttgattcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtat 565  Q
    | |||| |||||||||||| |||| ||||||||||| ||||||||| |||||||||| |    | |||| |||||| |  | | ||||||| |||| |||    
T  8353488 gctacatatgttgaacattgtatccagtggtgttgtggattcatggatgcaagtacgtataagatttttttaacaactattttcaattaattaattttat 8353389  T
Q  566 atttttatgtttatatgataatctaatattatgtcaacattt 607  Q
     |||  |||||| |||||||| |||||||||||||| |||||    
T  8353388 ttttacatgtttgtatgataaactaatattatgtcatcattt 8353347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 373 - 607
Target Start/End: Complemental strand, 16182489 - 16182255
Alignment:
Q  373 aataatatttaccgactaaaggttcacattagatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacac 472  Q
    ||||||||||||||| ||   | ||||||| ||||||||||||||||| ||| |||  |||||||||| ||| ||||| || |||| | | ||| ||||     
T  16182489 aataatatttaccgattagtcggtcacatttgatcatattcaatttcagagtcgaaggcaatcagtttcttacgagagcggatactttgtcatgctacat 16182390  T
Q  473 atgttgaacattatatcgagtggtgttgttgattcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtatattttta 572  Q
    ||||||||||| ||||| ||||||||||| ||||||||| |||||||| | |    | |||| |||||| |  ||||||||||| |||| |||  ||  |    
T  16182389 atgttgaacatcatatccagtggtgttgtggattcatggatgcaagtatgtataagatttttttaacaaatattataaattaattaattttattcttaca 16182290  T
Q  573 tgtttatatgataatctaatattatgtcaacattt 607  Q
    || | ||||||||| |||||||||||||| |||||    
T  16182289 tgctaatatgataaactaatattatgtcatcattt 16182255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 373 - 607
Target Start/End: Original strand, 23467743 - 23467979
Alignment:
Q  373 aataatatttaccgactaaaggttcacattagatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacac 472  Q
    |||| ||||||| |||||||   ||||||| ||||||||||||||||| ||| |||| ||||| |||||||| ||| | ||||||| | | ||| ||||     
T  23467743 aatagtatttactgactaaacagtcacatttgatcatattcaatttcaaagtcgaaagcaatcggtttgttacgagtgcggctactttttcatgctacat 23467842  T
Q  473 atgttgaacattatatcgagtggtgttgttgattcatggttgcaagtacgaaat--caaattttataacaagttgtataaattaatgaattgtatatttt 570  Q
    |||||||| ||| ||||   ||||||||| ||||||||| |||||||||| |||   | ||||| |||||| |||||||||||||| |||| ||| |||     
T  23467843 atgttgaaaattgtatccgatggtgttgtggattcatggatgcaagtacgtaataggatattttttaacaacttgtataaattaattaattttattttta 23467942  T
Q  571 tatgtttatatgataatctaatattatgtcaacattt 607  Q
     | |||||||| ||||  |||||| ||||||||||||    
T  23467943 caagtttatatcataaaataatatcatgtcaacattt 23467979  T

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Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 373 - 607
Target Start/End: Complemental strand, 5705860 - 5705626
Alignment:
Q  373 aataatatttaccgactaaaggttcacattagatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacac 472  Q
    ||||||||||||||| ||   | ||||||| ||||||||||||||||| ||| |||  |||||||||| ||| ||||| || |||| | | ||| ||||     
T  5705860 aataatatttaccgattagtcggtcacatttgatcatattcaatttcagagtcgaaggcaatcagtttcttacgagagcggatactttgtcatgctacat 5705761  T
Q  473 atgttgaacattatatcgagtggtgttgttgattcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtatattttta 572  Q
    ||||||||||| ||||| ||||||||||| ||||||||| |||||||| | |    | |||| |||||| |  ||||||||||| |||| |||  ||  |    
T  5705760 atgttgaacatcatatccagtggtgttgtggattcatggatgcaagtatgtataagatttttttaacaaatattataaattaattaattttattcttaca 5705661  T
Q  573 tgtttatatgataatctaatattatgtcaacattt 607  Q
    || | ||||||||| ||||||||||||||||||||    
T  5705660 tgctaatatgataaactaatattatgtcaacattt 5705626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 373 - 607
Target Start/End: Original strand, 2889560 - 2889794
Alignment:
Q  373 aataatatttaccgactaaaggttcacattagatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacac 472  Q
    ||||||||||||||| ||   | ||||||| ||||||||||||||||| ||| |||  |||||||||| ||| ||||| || |||| | | ||| ||||     
T  2889560 aataatatttaccgattagtcggtcacatttgatcatattcaatttcagagtcgaaggcaatcagtttcttacgagagcggatactttgtcatgctacat 2889659  T
Q  473 atgttgaacattatatcgagtggtgttgttgattcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtatattttta 572  Q
    ||||||||||| ||||| ||||||||||| ||||||||| |||||||| | |    | |||| |||||| |  ||||||||||| |||| |||  ||  |    
T  2889660 atgttgaacatcatatccagtggtgttgtggattcatggatgcaagtatgtataagatttttttaacaaatattataaattaattaattttattcttaca 2889759  T
Q  573 tgtttatatgataatctaatattatgtcaacattt 607  Q
    || | ||||||||| |||||||||||||| |||||    
T  2889760 tgctaatatgataaactaatattatgtcatcattt 2889794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 489
Target Start/End: Complemental strand, 20591716 - 20591669
Alignment:
Q  442 ttatgagagtggctactatataatgatacacatgttgaacattatatc 489  Q
    ||||||| ||||||||| |||||||||| | |||||||||||||||||    
T  20591716 ttatgagtgtggctactttataatgatatatatgttgaacattatatc 20591669  T

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Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 368 - 611
Target Start/End: Complemental strand, 40291000 - 40290761
Alignment:
Q  368 ttttgaataatatttaccgactaaaggttcacattagatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatga 467  Q
    ||||||||| ||||||||||||||| | ||||||| ||||||||||||||||| ||| |||  |||||||||||| | ||||| || || | | | |||     
T  40291000 ttttgaatagtatttaccgactaaacggtcacatttgatcatattcaatttcagagtcgaaggcaatcagtttgtgacgagagaggatattttgtcatgc 40290901  T
Q  468 tacacatgttgaacattatatcgagtggtgttgttgattcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtatat 567  Q
    |||| |||||||||||| ||||  |||||||||    |  ||||  ||||||||| |    | |||| |||||| |  ||||||||||| |||| ||| |    
T  40290900 tacatatgttgaacattgtatccggtggtgttg----tctatggacgcaagtacgcataagatttttttaacaactattataaattaattaattttattt 40290805  T
Q  568 ttttatgtttatatgataatctaatattatgtcaacatttgttt 611  Q
    ||  ||||||||||||||| ||||||||||| || |||| ||||    
T  40290804 ttacatgtttatatgataaactaatattatgccatcattagttt 40290761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 466 - 603
Target Start/End: Complemental strand, 20218426 - 20218286
Alignment:
Q  466 gatacacatgttgaacattatatcgagtggtgttgttgattcatggttgcaagtacgaaatcaaattttat---aacaagttgtataaattaatgaattg 562  Q
    |||||| |||||||||||| ||||  |||||| ||||||||||||| |||||||    |||  |||||| |   |||||||||||||| ||| | ||||     
T  20218426 gatacatatgttgaacattgtatctggtggtggtgttgattcatggatgcaagtgtctaatagaattttttttgaacaagttgtataagttacttaattt 20218327  T
Q  563 tatatttttatgtttatatgataatctaatattatgtcaac 603  Q
    ||| |||| |||||||||| |||||||||||||||||||||    
T  20218326 tattttttcatgtttatataataatctaatattatgtcaac 20218286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 11664967 - 11665063
Alignment:
Q  236 atacaaaatcgcaagcataagtttagtcacactcaaaagaacatctcaatttgatgttgtagaaagttgacataagttattgcttcatctatcatct 332  Q
    |||| ||||| ||||||||| |||||||||||  ||||||| | ||||||||||| ||||||||| |||||||||| ||  |||||||||| |||||    
T  11664967 atactaaatcacaagcataaatttagtcacacagaaaagaatacctcaatttgattttgtagaaacttgacataagctaccgcttcatctaacatct 11665063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 368 - 607
Target Start/End: Original strand, 17792208 - 17792447
Alignment:
Q  368 ttttgaataatatttaccgactaaaggttcacattagatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatga 467  Q
    |||| |||| |||||||| |||||| |  |||||| || |||||||||||| | ||| |||| ||||||||||||||| ||||  |||||| | | |||     
T  17792208 tttttaatagtatttaccaactaaacggccacatttgaccatattcaattttagagtcgaaagcaatcagtttgttataagagcagctactttgtcatgc 17792307  T
Q  468 tacacatgttgaacattatatcgagtggtgttgttgattcatggttgcaagtacgaaatca-aattttataacaagttgtataaattaatgaattgtata 566  Q
    |||| ||||||||||| ||||   ||  |||||| |||| |||| ||||||||| | || | | |||| | | || | |||||||||| | |||| |||     
T  17792308 tacatatgttgaacatcatatttggtactgttgtggattaatggatgcaagtac-atataatatttttttgataactagtataaattacttaattttatt 17792406  T
Q  567 tttttatgtttatatgataatctaatattatgtcaacattt 607  Q
    ||   ||||||||||||||| |||| |||||||||||||||    
T  17792407 ttcacatgtttatatgataaactaacattatgtcaacattt 17792447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 540 - 607
Target Start/End: Original strand, 7860645 - 7860712
Alignment:
Q  540 aagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaacattt 607  Q
    |||||||||||||| || |||| ||| |||  |||| ||||||||||||||||||||||||| |||||    
T  7860645 aagttgtataaatttattaattttatttttgcatgtgtatatgataatctaatattatgtcatcattt 7860712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 489
Target Start/End: Complemental strand, 9102683 - 9102636
Alignment:
Q  442 ttatgagagtggctactatataatgatacacatgttgaacattatatc 489  Q
    ||||||| ||||||||| |||||||||||| |||||||||||| ||||    
T  9102683 ttatgagtgtggctactttataatgatacatatgttgaacattgtatc 9102636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 607
Target Start/End: Original strand, 3593785 - 3593924
Alignment:
Q  468 tacacatgttgaacattatatcgagtggtgttgttgattcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtatat 567  Q
    |||| ||||||||||| ||||| ||||||||||| ||||||||| |||||||| | |    | |||| |||||| |  ||||||||||| |||| |||      
T  3593785 tacatatgttgaacatcatatccagtggtgttgtggattcatggatgcaagtatgtataagatttttttaacaaatattataaattaattaattttattc 3593884  T
Q  568 ttttatgtttatatgataatctaatattatgtcaacattt 607  Q
    ||  ||| | ||||||||| |||||||||||||| |||||    
T  3593885 ttacatgctaatatgataaactaatattatgtcatcattt 3593924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 22818992 - 22818950
Alignment:
Q  442 ttatgagagtggctactatataatgatacacatgttgaacatt 484  Q
    ||||||| ||||||||| |||||||||||| ||||||||||||    
T  22818992 ttatgagtgtggctactttataatgatacatatgttgaacatt 22818950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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