View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700-Insertion-12 (Length: 1013)
Name: NF2700-Insertion-12
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700-Insertion-12 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 382 - 815
Target Start/End: Complemental strand, 33818036 - 33817608
Alignment:
| Q |
382 |
acaaatatggttaactaaagccccatcttgggtgattttatcatgtatggtttctctcttatgatttactttcttttgtttatcttgtgtggtggttgta |
481 |
Q |
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| T |
33818036 |
acaaatatggttaattaaagccccatcttgggtgattttatcatgtatggtttctctctgatgatttactttctt--gtttatcttgtgcggtggttgta |
33817939 |
T |
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| Q |
482 |
gcctcttttttgttgacaatactcttttgtatagttgaggtaatgtactacttgtatttcactctctaattaagcaaccaatgaagaaaacttgtcatga |
581 |
Q |
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| T |
33817938 |
gcctcttttttgttgacaatactcttttgtatagttgaggtaatctactacttgtatttcactctctaattaaacaaccaatgaagaaaacttgtcatga |
33817839 |
T |
|
| Q |
582 |
ttacaaaataattttttaaatcaagttttgcgaaataatattttctgaccttatgaaatgatacatgattagttggattactacttgcaatccatgacat |
681 |
Q |
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| T |
33817838 |
ttacaaaataattttttaaatcaagttttgcgaaataatattttctgaccttatgaaatgatacatgattagttggatttctacttgcaatccatgacat |
33817739 |
T |
|
| Q |
682 |
ttatgtttcattgttgcacttagtggttcagggttaatatgtatatttttaaatgcaaagcagatatgcgtttnnnnnnngtacaggggagtattcaaag |
781 |
Q |
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| T |
33817738 |
ttatg-ttaattgttgcacttagtggttcagggttaatatgtatatttttaaatgcaaagcagatatgcgtttaaaaaaagtaca-aggagtattc-aag |
33817642 |
T |
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| Q |
782 |
tctcaaactcattacaagatggacaacataagac |
815 |
Q |
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| T |
33817641 |
tctcaaacgcattacaagatggacaacataagac |
33817608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 33818410 - 33818099
Alignment:
| Q |
8 |
tttcttggaagtaaaggttcaatgaaggtacgtagtcttgtttaaagagagacaaatagctgtctctatgatggttaacatttgtcaggcttcccctatt |
107 |
Q |
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| T |
33818410 |
tttcttggaagtgaaggttcaatgaaggtacgtagtcttgttaaaagagagacaaatagctgtctctatgatggttaacatttgtcaggcttcccctatt |
33818311 |
T |
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| Q |
108 |
ttgctcatttagaaaagaatacatatagatgggaaaaagttagacaacaatagtcaaagagagtttgatatgttcccaaacccaaccatggactaattca |
207 |
Q |
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| T |
33818310 |
ttgctcattgagaaaagaatacatatagatgggaaaaagttagacaacaatagtcaaagagagtttgatatgttcccaaacccaaccatggactaattca |
33818211 |
T |
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| Q |
208 |
aatattccttgcacttttgtttgttaattccccacaccaattccttgtcgctctttctatgattccttcaaggatatatgtaaaaagtaacatttccatg |
307 |
Q |
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| T |
33818210 |
aatattccttgcacttttgtttgttaattccccacaccaattccttgtcgctctttctatgattccttcaaggatatatgtgaaaagtaacatttccatg |
33818111 |
T |
|
| Q |
308 |
catgtgatcatc |
319 |
Q |
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| T |
33818110 |
catgtgatcatc |
33818099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 833 - 1013
Target Start/End: Complemental strand, 33817621 - 33817440
Alignment:
| Q |
833 |
ggacaacataagactttgatgagtcgggaccttgtcgaggagcagtttccaagaaaatgcgatatctttttccggattaacactcttccaaaccttagaa |
932 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33817621 |
ggacaacataagactttgatgagtcggggccttgtcgaggagcagttttcaagaaaatgcgataactttttccggattaacactcttccaaaccttagaa |
33817522 |
T |
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| Q |
933 |
atgatttggagttgatccatcgagaaaggtagatttgccgagaaagtccaataagtcaagttattcgagt-aataccactag |
1013 |
Q |
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| T |
33817521 |
atgatttggagttgatccatcgagaaagatagatttgccgagagagtccaataagtcaagttattcgagtaaataccactag |
33817440 |
T |
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