View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700-Insertion-13 (Length: 337)
Name: NF2700-Insertion-13
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700-Insertion-13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 78 - 337
Target Start/End: Original strand, 42685501 - 42685760
Alignment:
| Q |
78 |
gttttcttctttcttgacatcaatctttcgtctcctaagttacatttcaccagcattcaaactacccaacaatggtatcaaggaaatagattataaacnn |
177 |
Q |
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| T |
42685501 |
gttttcttctttcttgacatcaatctttcgtctcctaagttacatttcaccagcattcaaactagccaacaatggtatcaaggaaatagattataaacaa |
42685600 |
T |
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| Q |
178 |
nnnnnncaatacgaagatagtgaattcaacaatatcttgaccggagtccttagcttattagctctaatggtttccattccagtattgaatttgggtttag |
277 |
Q |
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| T |
42685601 |
aaaaaacaatacgaagatagtgaattcaacaatatcttgaccggagtccttagcttattagctctaatggtttccattccagtattgaatttgggtttag |
42685700 |
T |
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| Q |
278 |
aagcatggagaacagaagaagtcaaaacagcatgcgatgcttcgtacgaaaaacatgtta |
337 |
Q |
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| T |
42685701 |
aagcatggagaacagaagaagtcaaaacagcatgcgatgcttcgtatgaaaaacatgtta |
42685760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 42685431 - 42685460
Alignment:
| Q |
8 |
ctttctttcaaaattggaattacctatcct |
37 |
Q |
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| T |
42685431 |
ctttctttcaaaattggaattacctatcct |
42685460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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