View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700-Insertion-15 (Length: 138)
Name: NF2700-Insertion-15
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700-Insertion-15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 6e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 54084096 - 54084226
Alignment:
| Q |
8 |
atgccaatgagcaagttcaaggcgtttcaaccacaagtttttatccatccaaattcaaatatgccacgccaatatgatctcctccactttctagcctcaa |
107 |
Q |
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| T |
54084096 |
atgccaatgagcaagttcaaggcgtttcaaccacaagtttttatccatccaaattcaaatatgccacgccaatatgatctcctctactttctagcctcaa |
54084195 |
T |
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| Q |
108 |
acttaaaataatcattccgcattttcacacc |
138 |
Q |
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| T |
54084196 |
acttaaaataatcattccgcattttcacacc |
54084226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 54080741 - 54080871
Alignment:
| Q |
8 |
atgccaatgagcaagttcaaggcgtttcaaccacaagtttttatccatccaaattcaaatatgccacgccaatatgatctcctccactttctagcctcaa |
107 |
Q |
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|||| |||| ||| |||||||| | ||||||||||||||||| | ||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||| |
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| T |
54080741 |
atgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatatgccacgcaaatatgatttcccccactttctagcctcaa |
54080840 |
T |
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| Q |
108 |
acttaaaataatcattccgcattttcacacc |
138 |
Q |
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| T |
54080841 |
acttaaaataatcattccacatgttcacacc |
54080871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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