View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700-Insertion-2 (Length: 476)
Name: NF2700-Insertion-2
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700-Insertion-2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 6 - 476
Target Start/End: Complemental strand, 21934090 - 21933622
Alignment:
| Q |
6 |
cataacggttcttctgtacaaaatagtagttcttctatatccaatgtcagttgacaaaacccagggtaagcaaggatctacaagaacaaaacgtattttt |
105 |
Q |
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| T |
21934090 |
cataacggttctt--gtacaaaatagtagttcttctatatccaatgtcagttgacaaaacccagggtaagcaaggatctacaagaacaaaacgtattttt |
21933993 |
T |
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| Q |
106 |
agtatacggtaatcaacgagttaccaaataatttacaaaatgaaaaaccttaccgaaaatctggaatcaacatcacttgaagtcaatttcttctcataca |
205 |
Q |
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| T |
21933992 |
agtatacggtaatcaacgagttaccaaataatttacaaaatgaaaaatcttaccgaaaatctggaatcaacatcacttgaagtcaatttcttctcataca |
21933893 |
T |
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| Q |
206 |
acaaactgaaattcatctaatcatgcacaaatggtgttggaacaacattgaacaattgaagaggaaggtcannnnnnnncaatgataaatttcataggag |
305 |
Q |
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| T |
21933892 |
acaaactgaaattcatctaatcatgcacaaatggtgttggaacagcattgaacaattgaagaggaaggtcattttttttcaatgataaatttcataggag |
21933793 |
T |
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| Q |
306 |
ggctacacataagataacgtattaatttgccaaactcatctttgataacactgttgtgacctaagcaccaagagaaatgttgtaaaagttgcgaagaaca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| |
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| T |
21933792 |
ggctacacataagataacgtattaatttgccaaactcatctttgataacactgttgtgacttaagcaccaagagaaatgttctaaaagttgctaagaaca |
21933693 |
T |
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| Q |
406 |
tggcatccttttgtcaattaaatgcttccattgttcctttcaaccaagacctcaaactcgttgttatttgg |
476 |
Q |
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| T |
21933692 |
tgacatccttttgtcaattaaatgcttccattgttccttttaaccaagacctcaaactcgttgttatttgg |
21933622 |
T |
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