View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700-Insertion-3 (Length: 401)

Name: NF2700-Insertion-3
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700-Insertion-3
NF2700-Insertion-3
[»] chr5 (1 HSPs)
chr5 (8-401)||(43410812-43411235)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 43410812 - 43411235
Alignment:
Q  8 gtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttcccctctca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410812 gtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttcccctctca 43410911  T
Q  108 atcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagctagct----tacaacttct---catctgaatgtgttgtgtc-------- 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||   |||||||||||||||||||            
T  43410912 atcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagctagctagcttacaacttctgatcatctgaatgtgttgtgtctgtctgtc 43411011  T
Q  193 ----tgtctgtatattgtatagcatccaaattcccaagcaaacataacatcaatgttagctcatatacctttactgcttttcatttaattactcgttaag 288  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43411012 tgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatcaatgttagctcatatacctttactgcttttcatttaattactcgttaag 43411111  T
Q  289 ttagattctgcggctttattttgttaattacacatcatattgtttaattagagttttagttaacaaagcatcataccaaa-----------catgtagtc 377  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||           |||||||||    
T  43411112 ttagattctgcggctttattttgttaattacacatcttgttgtttaattagagttttagttaacaaagcatcataccaaactgttacttctcatgtagtc 43411211  T
Q  378 ttcgtgattacataaactattttg 401  Q
    || |||||||||||||||||||||    
T  43411212 tttgtgattacataaactattttg 43411235  T

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