View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700-Insertion-5 (Length: 369)
Name: NF2700-Insertion-5
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700-Insertion-5 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 208 - 369
Target Start/End: Original strand, 9580594 - 9580755
Alignment:
| Q |
208 |
ctaaagactataacttaactcataaaaagaaccaatagcatcaactagaagaaccttaacaaacagcaaaaataacaacattatcattaagcctactaaa |
307 |
Q |
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| T |
9580594 |
ctaaagactataacttaactcataaaaagaaccaagagcatcaactagaagaaccataacaaacagcaaaaataacaaaattatcattaagcctactaaa |
9580693 |
T |
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| Q |
308 |
acaaatatcatctttagatttaaataaatagttgtaaatttaacaatcaaacttcatgccta |
369 |
Q |
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| T |
9580694 |
acaaatatcatctttaaatttaaataaatagttataaatttaacaatcaaacttcatgccta |
9580755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 100 - 368
Target Start/End: Original strand, 9586074 - 9586338
Alignment:
| Q |
100 |
ctaaaatgtgtatacattgattttatgaaacaacacccaagtgcaatcataaacatattttt-tgcacccnnnnnnnnnnnnnnnnntatccaacatcca |
198 |
Q |
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| T |
9586074 |
ctaaaatgtgtatgcattcatgttatgaaacaacacccaagtgcaatcgtaaacatatttttatgcacgcaaaaaactaagac----tatgcaacatcca |
9586169 |
T |
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| Q |
199 |
aatgtctaactaaagactataacttaactcataaaaagaaccaatagcatcaactagaagaaccttaacaaacagcaaaaataacaacattatcattaag |
298 |
Q |
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| T |
9586170 |
aata-ctaattaaagactataacttaagtcatagaaagaaccaagagcatcaactagaagaaccataacaaacaacaaaaataacaacattatcattaag |
9586268 |
T |
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| Q |
299 |
cctactaaaacaaatatcatctttagatttaaataaatagttgtaaatttaacaatcaaacttcatgcct |
368 |
Q |
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| T |
9586269 |
cctactaaaacaaatatcatctttaaatttaaataaatagttgtaaatttaacaatcaaacttcatgcct |
9586338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 37932 - 37983
Alignment:
| Q |
257 |
agaaccttaacaaacagcaaaaat-aacaacattatcattaagcctactaaa |
307 |
Q |
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| T |
37932 |
agaaccataacaaacaacaaaaatgaacaacattatcattaagcctcctaaa |
37983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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