View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700-Insertion-6 (Length: 271)
Name: NF2700-Insertion-6
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700-Insertion-6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 4956500 - 4956763
Alignment:
| Q |
8 |
accctattacacgaatcatattcaaagacttgttaaactctttatcttcttttaaaggatctttcaaacttatttctcttccaataatatttgctgcttc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4956500 |
accctattacacgaatcatattcaaagacttgttaaactctttatcttcttttaaaggatctttcaaacttatttctcttccaataatatttgctgcttc |
4956599 |
T |
|
| Q |
108 |
acatataccattttctcccactaacttcctctttggtagtgttgcaagacaaaatgatgaacaatttccaaaatatgtggaagggattgaaagttcaaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4956600 |
acatataccattttctcccactaacttcctctttggtagtgttgcaagacaaaatgataaacaatttccaaaatatgtggaaggaattgaaagttcaaaa |
4956699 |
T |
|
| Q |
208 |
cgattacgcaaatccattagaaatccaaaaccatgaatatcctcaaaattatcgtctgatggag |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| |
|
|
| T |
4956700 |
cgattacgcaaatccattagaaatccaaaaccatgaatatcctcataatcatcgtctgttggag |
4956763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University