View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700R-Insertion-1 (Length: 1046)
Name: NF2700R-Insertion-1
Description: NF2700R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700R-Insertion-1 |
 | |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 742; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 8 - 937
Target Start/End: Original strand, 7884862 - 7885793
Alignment:
| Q |
8 |
aaagatgggcaatgttagagcagctgagcgagtaagctca--ctttctcaaagtcactagtccaaaaggtgggtcgtcagaggcataaaactaagtcaca |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7884862 |
aaagatgggcaatgttagagcagctgagcgagtgagctcattctttctcaaagtcactagtccaaaaggtgggtcgtcagagacataaaactaagtcaca |
7884961 |
T |
|
| Q |
106 |
agcgtgatgggaatggacaatgaagcattacccacgatctttgctcttagtgtcaataattgtttcgagaaatgagggaataaacatattgtagtggagc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7884962 |
agcgtgatgggaatggacaatgaagcattacccgcgatctttgctcttagtgtcaataattgtttcgagaaatgagggaagaaacatattgtagtggagc |
7885061 |
T |
|
| Q |
206 |
tgcacataaaaggaacctatcaacggatcatgctggagtgaagaatttgaagccaaaacatggggtgtcatggtcccattaccaagggagttatcacgca |
305 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
7885062 |
tgcacataaaaggaacttatcaacggatcatgctggagttaagaatttgaagccaaaacatggggtgttatgatcccactaccaagggagttatcacgca |
7885161 |
T |
|
| Q |
306 |
acaccctaaaaaattattcgaataggggttacgcattgtagccctgtaggtcatgttgtttgactaatatgcaatagtaacattataaatactttgttca |
405 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7885162 |
acaccctaaaaaattattcaaataggggttacgtattgtagccttgtaggtcatgttgtttgactaatatgcaatagtaacattataaatactttgttca |
7885261 |
T |
|
| Q |
406 |
tacattataattaacacatacaatcaaacaagcttatttttgcaaatttatgtattttttaatgttgctcgaaactctaagcaattgtatctaacactct |
505 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7885262 |
tacattataattaacacatacaat-aaacaagcttatttttgcaaatttatgtattttttaatgttgctcgaaactctaagcaattgtatctaacactct |
7885360 |
T |
|
| Q |
506 |
acttaatatcatgctctaaaagtctcacctcacatatcctttggaacaatggacctaggttgctatggtgtaggctattgaggatgaggctgatccaaca |
605 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||||| |
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|
| T |
7885361 |
acttaaaatcatgctctaaatgtctcacctcacatatcctttggaacaatggacgtaggttgccctggtgtaggttattgaggatgaagctgatccaaca |
7885460 |
T |
|
| Q |
606 |
tcattttggtcattagacttcagatctaaaattcacaccttaggtctaaagtatcacatttgaagg--nnnnnnnnttgaaatgcgattttaacacatca |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
7885461 |
tcattttggtcattagacttcagatctaaaattcacaccttaggtctaaagtatcacatttgaaggaaaaaaaatattgaaatacgattttaacacatca |
7885560 |
T |
|
| Q |
704 |
ttatttaatggatttaagacctttgaaaaatcgcttaaaatgtatctttttcaaatagtannnnnnnaacaattcgaacaaaaatagcccgccaaatact |
803 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| | |
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| T |
7885561 |
ttatttaacggatttaagaccttcgaaaaatcgcttaaaatatatctttttcaaatagta-ttttttaacaattcgaacagaaatagcccgccaaatatt |
7885659 |
T |
|
| Q |
804 |
acaaattaacgtatagtaatttgttgaacatcataagccaagtgtaaattattgcccagggcatctccaagatcagacgtgcatacaattctttaacaca |
903 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7885660 |
acaaattatcgtatagtaatttgttgaacatcataagccaagtgtaaattattgtccagggcatctccaagatcagacgtgcatacaattctttaacaca |
7885759 |
T |
|
| Q |
904 |
tatagtctagcataaattcatcacatgtgattca |
937 |
Q |
| |
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| |||||||||||||||||||||||||||||||| |
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|
| T |
7885760 |
tgtagtctagcataaattcatcacatgtgattca |
7885793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 370 - 456
Target Start/End: Complemental strand, 21505559 - 21505469
Alignment:
| Q |
370 |
taatatgcaatagtaacattataaatactttgttcatacattataattaaca----catacaatcaaacaagcttatttttgcaaatttat |
456 |
Q |
| |
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||||||||||| || | | ||||||||||||||| ||||||| ||||||||| || |||||||||||| |||||||| |||||||||| |
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|
| T |
21505559 |
taatatgcaattgtcaaactataaatactttgtttatacattgtaattaacatatccaaacaatcaaacaaacttattttcgcaaatttat |
21505469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 18372404 - 18372457
Alignment:
| Q |
364 |
tttgactaatatgcaatagtaacattataaatactttgttcatacattataatt |
417 |
Q |
| |
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|||| |||||| |||||||| ||| |||||||||||| |||||||||||||||| |
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|
| T |
18372404 |
tttggctaataggcaatagttacactataaatactttattcatacattataatt |
18372457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 11483201 - 11483126
Alignment:
| Q |
261 |
aaacatggggtgtcatggtcccattaccaagggagttatcacgcaacaccctaaaaaattattcgaataggggtta |
336 |
Q |
| |
|
|||||||||||| || | ||||| ||||||| ||| |||||||||||| || |||||||| ||||||||||||| |
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|
| T |
11483201 |
aaacatggggtgccacgatcccactaccaagagagctatcacgcaacatccgtgaaaattatccgaataggggtta |
11483126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 426 - 456
Target Start/End: Complemental strand, 8821725 - 8821695
Alignment:
| Q |
426 |
caatcaaacaagcttatttttgcaaatttat |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
8821725 |
caatcaaacaagcttatttttgcaaatttat |
8821695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 350 - 420
Target Start/End: Original strand, 21255432 - 21255502
Alignment:
| Q |
350 |
tgtaggtcatgttgtttgactaatatgcaatagtaacattataaatactttgttcatacattataattaac |
420 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||| |||||||||||| | | |||||||||| |||||||| |
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|
| T |
21255432 |
tgtatgtcatgttgtttgtctaatagacaatagttacattataaatattatattcatacattgtaattaac |
21255502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 432
Target Start/End: Original strand, 13760289 - 13760362
Alignment:
| Q |
360 |
gttgtttgactaatatgcaatagtaacattataaatact-ttgttcatacattataattaacacatacaatcaa |
432 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||| ||||||||||||| |||||||||| || |||||| |
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|
| T |
13760289 |
gttgtttgactaataaataataattacattataaatactcttgttcatacattgtaattaacacgtataatcaa |
13760362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 35414031 - 35414084
Alignment:
| Q |
378 |
aatagtaacattataaatactttgttcatacattataattaacacatacaatca |
431 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||||| || ||||||||| |
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| T |
35414031 |
aatagttacattataaacactttgtttatacattataattatcatatacaatca |
35414084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 8957 - 8914
Alignment:
| Q |
389 |
tataaatactttgttcatacattataattaacacatacaatcaa |
432 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
8957 |
tataaatagtttgttcatacattgtaattaacacatccaatcaa |
8914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 14247 - 14204
Alignment:
| Q |
389 |
tataaatactttgttcatacattataattaacacatacaatcaa |
432 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
14247 |
tataaatagtttgttcatacattgtaattaacacatccaatcaa |
14204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 5927871 - 5927906
Alignment:
| Q |
389 |
tataaatactttgttcatacattataattaacacat |
424 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5927871 |
tataaatactttattcatacattataattaacacat |
5927906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 432
Target Start/End: Original strand, 27843828 - 27843871
Alignment:
| Q |
389 |
tataaatactttgttcatacattataattaacacatacaatcaa |
432 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
27843828 |
tataaatactatgttcatacattgtaattaacacattcaatcaa |
27843871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 7665417 - 7665360
Alignment:
| Q |
289 |
aagggagttatcacgcaacaccctaaaaaattattcgaataggggttacgcattgtag |
346 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
7665417 |
aagggggttatcacccaacacccgcaaaaattagtcgaataggggttatacattgtag |
7665360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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