View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700R-Insertion-11 (Length: 589)
Name: NF2700R-Insertion-11
Description: NF2700R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700R-Insertion-11 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 212 - 476
Target Start/End: Complemental strand, 26746522 - 26746262
Alignment:
| Q |
212 |
tcaattagattagatcatgaaaataattttttcgccattcgcttcattcaattcagcaacctaataatacttctctcattccttttgattacttctatgc |
311 |
Q |
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| T |
26746522 |
tcaattagattagatcatgaaaataatcttttcgccattcgcttcattcaattcagcaacctaataatacttctctcattccttttgattacttctatgc |
26746423 |
T |
|
| Q |
312 |
aacactcaattttatgttatactcttttcctccnnnnnnnnnnnnnacttcatttgtgttataggctggtcctcatttttcttcttcaactaccatgctt |
411 |
Q |
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| T |
26746422 |
aacactcaattttatgttatactcttttcttcc----attttttttacttcatttatgttataggctggtcctcatttttcttcttcaactactatgctt |
26746327 |
T |
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| Q |
412 |
attattggtttctattgacgtttatatgattgtttcgaacatatagaggaatttaatcttcatat |
476 |
Q |
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| T |
26746326 |
attattggtttctattgccgtttatatgattgtttcgaacatataaaggaatttaatcttcatat |
26746262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 492 - 589
Target Start/End: Complemental strand, 26743858 - 26743761
Alignment:
| Q |
492 |
tatgtttagaagtaaagcaagtaagaccgaagagacaagaatatttcctgttacgtttattctttgcttcttctatttaactataaagaatacaatgc |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26743858 |
tatgtttagaagtaaagcaagtaagaccgaagagacaagaatatttcctgttacgtttattctttgcttcttctatttaactataaagaatacaatgc |
26743761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 26746704 - 26746618
Alignment:
| Q |
8 |
acattcaaccattgtcatcgctacattttcagaaaaatattgcattaaattaaacactcaaagtcatacactcttacaccatccctt |
94 |
Q |
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|||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26746704 |
acattcaaccattgtcatcgctgcatttccaaaaaaatactgcattaaattaaacactcaaagtcatacactcttactccatccctt |
26746618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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