View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700R-Insertion-14 (Length: 520)
Name: NF2700R-Insertion-14
Description: NF2700R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700R-Insertion-14 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 9 - 520
Target Start/End: Complemental strand, 4644238 - 4643726
Alignment:
| Q |
9 |
aatttaacagttcttcagnnnnnnnaaacagtcatactattcaatttggttcgattttgggcttttttcaacattcctaattatcagttaataataaaaa |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4644238 |
aatttaacagttcttcagtttttttaaacagtcatactattcaatttggttcgattttgggcttttctcaacattcctaattatcagttaataataaaaa |
4644139 |
T |
|
| Q |
109 |
tttgttacaatgaggtctgcaaaaaatgtcgaaaaagtatagtttgnnnnnnnaaaggtgactatgaacagttcgattacgttttaccaaattgttttaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4644138 |
tttgttacaatgaggtctgcaaaaaatgtcgaaaaagtatagtttgtttttttaaaggtgactatgaacagttcggttacgttttaccaaattgttttaa |
4644039 |
T |
|
| Q |
209 |
ctattcagtttggtatccttcctgaaccatgaacagttctatatgactgaacttttatgttgcaacttgtaatgcttacttgcagcacaaatacattgat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4644038 |
ctattcagtttggtatccttcctgaaccctgaacagttctatatgactgaacttttatgttgcaacttgtaatgcttacttgcagcacaaacacattgat |
4643939 |
T |
|
| Q |
309 |
atgacataaaaagtaaa-aggattagcaagcagactaccatattgttctggggatttgtacaactgcaatgcagcattgaaataatctgcatagatgata |
407 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4643938 |
atgacataaaaagtaaagaggattagcaagcagactaccatattgttctggagatttgtacaactgcaatgcagcattgaaataatctgcatagatgata |
4643839 |
T |
|
| Q |
408 |
ttagtaaaaggatacagcactcgaagcttatgtagttcggtttgaagcagctcattatggtattcaaaaaacttgtttaaccatttcaaacatccagctt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4643838 |
ttagtaaaaggatacagcactcgaagcttatgtagttcggtttgaagcagctcattatggtattcaaaaaacttgtttaaccatttcaaacatccagctt |
4643739 |
T |
|
| Q |
508 |
gatcatactcctc |
520 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4643738 |
gatcatactcctc |
4643726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 351 - 517
Target Start/End: Complemental strand, 4661784 - 4661614
Alignment:
| Q |
351 |
tgttctggggatttgtacaactgcaatgcagcat--tgaaata--atctgcatagatgatattagtaaaaggatacagcactcgaagcttatgtagttcg |
446 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||||||| |||| |||||| ||||||||| ||| ||||||| |
|
|
| T |
4661784 |
tgttctggagatttgtaacactgcaatgcagcatattgaaatataatctgcatagatgatattagcaaaatgatacaagactcgaagcctatttagttcg |
4661685 |
T |
|
| Q |
447 |
gtttgaagcagctcattatggtattcaaaaaacttgtttaaccatttcaaacatccagcttgatcatactc |
517 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4661684 |
atttgaagcagctcattatgatattcaaaaaacttgtttaaccatgtcaaacatccagcttgatcatactc |
4661614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 7426046 - 7426013
Alignment:
| Q |
70 |
cttttttcaacattcctaattatcagttaataat |
103 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
7426046 |
cttttttcaacagtcctaattatcagttaataat |
7426013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 51215834 - 51215749
Alignment:
| Q |
34 |
aaacagtcatactattcaatttggttcgattttgggcttttttcaacattcctaattatcagttaataataaaaatttgttacaat |
119 |
Q |
| |
|
||||||||||| ||||||||||||| |||| || ||| ||||||| ||||||||||| ||||||||| |||||| |||||| |
|
|
| T |
51215834 |
aaacagtcataaaattcaatttggtttcgtttttggttttcttcaacagccctaattatcaattaataatagcaatttggtacaat |
51215749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University