View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700R-Insertion-15 (Length: 442)

Name: NF2700R-Insertion-15
Description: NF2700R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700R-Insertion-15
NF2700R-Insertion-15
[»] chr2 (1 HSPs)
chr2 (9-442)||(10760118-10760551)


Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 9 - 442
Target Start/End: Complemental strand, 10760551 - 10760118
Alignment:
Q  9 tggacaacgtacaatttgttcgtgaagcctaatcgagtaaagttgaaccggttcttgagtgagacgaggttttgagtcatcatctgaagagtaaacacat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10760551 tggacaacgtacaatttgttcgtgaagcctaatcgagtaaagttgaaccggttcttgagtgagacgaggttttgagtcatgatctgaagagtaaacacat 10760452  T
Q  109 tgaaggtcatgtttggtgtgatagcgaaaagataaagggtagtttaagaacgttaaaacatgatcaggaagcataactgtttcccgaattgtgatttggg 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10760451 tgaaggtcacgtttggtgtgatagcgaaaagataaagggtagtttaagaaaattaaaacatgatcaggaagcaaaactgtttcccgaattgtgatttggg 10760352  T
Q  209 gtggcactggagttggccatttcaaagctgcaattgggatgtgaaatcgagggaggtagaaggggtggatggatgaaataattagggaggtaaagataat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10760351 gtggcactggagttggccatttcaaagctgcaattgggatgtgaaatcgagggaggtagaaggggtggatggatgaaataattagggaggtaaagataat 10760252  T
Q  309 ggaagataagacaaccacaatagtgaaccagaagaatgtgctccatgaaatggctctgctatgttttctatgatctttcatgagagaaacccaaaacgag 408  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10760251 ggaagataagacaaccacaatagtgaaccaaaagaatgtgctccatgaaatggctctgctatgttttctatgatctttcatgagagaaacccaaaacgag 10760152  T
Q  409 aagaaaaatgtaatagtaatgttctttgggttgc 442  Q
    ||||||||||||||||||||||||||||||||||    
T  10760151 aagaaaaatgtaatagtaatgttctttgggttgc 10760118  T

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