View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700R-Insertion-16 (Length: 370)
Name: NF2700R-Insertion-16
Description: NF2700R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700R-Insertion-16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 370
Target Start/End: Complemental strand, 29057221 - 29056849
Alignment:
| Q |
8 |
agtatccatttgaaatcg-acggaccagatccgtgcttaaacgtgggaaaaatccaattccaaattacaaacagtccaaaacacaaacaccatcgatctc |
106 |
Q |
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| T |
29057221 |
agtatccatttgaaatcggacggaccagatccgtgcttaaacgtgggaaaaatccaattccaaattacaaacagtccaaaacacaaacaccatcgatctc |
29057122 |
T |
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| Q |
107 |
ttcacccgcctcatcataaccgattaaaccaccaccactctcttgaaactctcgcgcgctgttctccacgacttctagaaccttccttcaatggccacgg |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29057121 |
ttcaaccgcctcatcataaccgattaaaccaccaccactctcttgaaactctcgcgcgctattctccacgacttctagaaccttccttcaatggccacgg |
29057022 |
T |
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| Q |
207 |
ctacgcttaactccgccaccaccgataacaa---------cctcaaatccgccgtcgctgcattgtcacaaatcaggtaggtcctcactcttttcttcat |
297 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29057021 |
ctacgcttaactccgccaccaccgataacaacctctccaacctcaaatccgccgtcgctgcattgtcacaaatcaggtaggtcctcactcttttcttcat |
29056922 |
T |
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| Q |
298 |
ttaattttttcttcatcgaacgattctcgtgatcacgaattggaaattcgttaatatttttgtatattttgaa |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29056921 |
ttaattttttcttcatcgaacgattctcgtgatcacgaattggaaattcgttaatatttttgtatattttgaa |
29056849 |
T |
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