View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700R-Insertion-3 (Length: 950)

Name: NF2700R-Insertion-3
Description: NF2700R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700R-Insertion-3
NF2700R-Insertion-3
[»] chr8 (9 HSPs)
chr8 (124-947)||(2028363-2029187)
chr8 (586-947)||(1950276-1950633)
chr8 (755-901)||(10767585-10767731)
chr8 (756-903)||(2046376-2046526)
chr8 (751-901)||(2050187-2050337)
chr8 (756-903)||(2036999-2037149)
chr8 (751-901)||(2054193-2054346)
chr8 (751-862)||(2032985-2033099)
chr8 (771-882)||(2057169-2057280)
[»] chr4 (5 HSPs)
chr4 (751-845)||(48908694-48908788)
chr4 (241-294)||(9934305-9934358)
chr4 (326-377)||(9934378-9934429)
chr4 (183-286)||(49683363-49683465)
chr4 (249-321)||(85490-85564)
[»] chr5 (1 HSPs)
chr5 (193-365)||(12554660-12554830)
[»] chr2 (5 HSPs)
chr2 (190-361)||(15435095-15435265)
chr2 (817-865)||(28713345-28713393)
chr2 (777-871)||(28786134-28786228)
chr2 (817-862)||(28736619-28736664)
chr2 (817-862)||(28743245-28743290)
[»] chr7 (4 HSPs)
chr7 (192-293)||(30919586-30919686)
chr7 (190-293)||(30927271-30927373)
chr7 (218-294)||(7784157-7784232)
chr7 (251-294)||(20014040-20014083)
[»] chr3 (1 HSPs)
chr3 (192-376)||(11602316-11602498)
[»] chr6 (1 HSPs)
chr6 (338-367)||(3952052-3952081)


Alignment Details
Target: chr8 (Bit Score: 752; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 124 - 947
Target Start/End: Complemental strand, 2029187 - 2028363
Alignment:
Q  124 tagttatcatacaatatatttgttgtggacaagataacaaatatgataatttattttattgatgaaaggaaatcatatatgatttttaggtcacttttag 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2029187 tagttatcatacaatatatttgttgtggacaagataacaaatatgataatttattttattgaagaaaggaaatcatatatgatttttaggtcacttttag 2029088  T
Q  224 agttattttaaagttaaaagtatctagtttgaatgtattttagttgagttttgtaaaggattcgataaaaaagtcattaaaggtcaaaaaggggaaatta 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2029087 agttattttaaagttaaaagtatctagtttgaatgtattttagttgagttttgtaaaggattcgataaaaaagtcattaaaggacaaaaaggggaaatta 2028988  T
Q  324 tgcttgaaacgatggaaatccacccaaaccagacaactttgtaaccatgctatannnnnnnacaagtttaacaatgattcttggggcatagtggttttta 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||    
T  2028987 tgcttgaaacgatggaaatccacccaaaccagacaactttgtaaccatgctatatttttttacaagtttaacaatgattcttggagcatagtggttttta 2028888  T
Q  424 actacagagataggagaaaataagtttcaaagttaacttattataccatatcctctcatcaaacactaaattgagatgcgatatgatacgattatcctat 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2028887 actacagagataggagaaaataagtttcaaagttaacttattataccatatcctctcatcaaacactaaattgagatgcgatatgatacgattatcctat 2028788  T
Q  524 cttatctcttaattatcttgcacaccaacacatcctttatattttgtataagttggtcaatatatacggatatcagaggcactacttacacgtcgactaa 623  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2028787 cttatctcttaattatcttgcacagcaacacatcctttatattttgtataagttggtcaatatatacggatatcagaggcactacttacacgtcgactca 2028688  T
Q  624 aacaataattttaaaaagtaatataaaaaatattgaacacatctttaatctaaagtgtcgtttgtaccaatgaaaataactaaagttcaaggagcattga 723  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2028687 aacaataattttaaaaagtaatataaaaaatattgaacacatctttaatctaaagtgtcgtttgtaccaatgaaaataactaaagttcaaggagcattga 2028588  T
Q  724 gcacataaattgtatatgtatgcatacaaacatacctgcatacaacaggaaaatcttgaggtttgggagtatcaggagccaaggaacaagtacaagtatc 823  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  2028587 gcacataaattgtatatgcatgcatacaaacatacctgcatacaacaggaaaatcttctggtttgggagtatcaggagccaaggaacaagtacaagtatc 2028488  T
Q  824 cctccaattgagtgctggtgagctacacaaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtat-aaactcctttttagcatctgtt 922  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||     
T  2028487 cctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaataaatgatccatgcaaatctcttgtataaaactcctttttagcatctgtc 2028388  T
Q  923 tccatctcatgaaacctcttcacac 947  Q
    |||||||||||||||||||||||||    
T  2028387 tccatctcatgaaacctcttcacac 2028363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 586 - 947
Target Start/End: Original strand, 1950276 - 1950633
Alignment:
Q  586 tatacggatatcagaggcactacttacacgtcgactaaaacaataattttaaa-aagtaatataaaaaatattgaacacatctttaatctaaagtgtcgt 684  Q
    |||| ||| ||||||||| ||||  | ||||||||  ||  |||||||| ||| |||||||| ||| ||||||||| || |||||||||||||||||||     
T  1950276 tataaggacatcagaggcgctaccaaaacgtcgacacaagtaataatttaaaacaagtaataaaaataatattgaatacgtctttaatctaaagtgtcgg 1950375  T
Q  685 ttgtaccaatgaaaataactaaagttcaaggagcattgagcacataaattgtatatgtatgcatacaaacatacctgcatacaacaggaaaatcttgagg 784  Q
    | |||||  ||| |||||| ||| |||||||||||        ||||||| || |  ||| |||| |  |||||||||||||||||||||||||||| ||    
T  1950376 tcgtaccggtgataataaccaaatttcaaggagcaa-------ataaattttacacatatacatata--catacctgcatacaacaggaaaatcttgtgg 1950466  T
Q  785 tttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctacacaaatcaaaattgcttttgtaaataaatgatcca 884  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |    
T  1950467 tttgggagtatcaggagccaagtaacaagcacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaataaatgattta 1950566  T
Q  885 tgcatatctcttgtataa----actcctttttagcatctgtttccatctcatgaaacctcttcacac 947  Q
    |   ||||| |||| |||    ||||||||||||||||||| |||||||||||||||||||||||||    
T  1950567 tttctatcttttgtgtaaaagtactcctttttagcatctgtatccatctcatgaaacctcttcacac 1950633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 755 - 901
Target Start/End: Complemental strand, 10767731 - 10767585
Alignment:
Q  755 atacctgcatacaacaggaaaatcttgaggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctacacaaa 854  Q
    |||||||||||| ||||||| |||||  |||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||| | | |    
T  10767731 atacctgcatactacaggaatatcttctggtttgggagtatcaggagccaagtaacatgtaaaagtatccctccaattaagtgctggtgagctataaata 10767632  T
Q  855 tcaaaattgcttttgtaaataaatgatccatgcatatctcttgtata 901  Q
    ||||| || || ||||||||||| |||  |||  |||||||||||||    
T  10767631 tcaaagttactattgtaaataaaggatttatgtctatctcttgtata 10767585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 756 - 903
Target Start/End: Complemental strand, 2046526 - 2046376
Alignment:
Q  756 tacctgcatacaacaggaaaatcttgaggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctacaca 852  Q
    ||||||||||| |||||||  ||||  |||||| ||||||||||   ||||||| |||||| | ||||||| ||||||||||||||||||| |||| | |    
T  2046526 tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 2046427  T
Q  853 aatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaa 903  Q
     |||| ||||||| ||||||||||| |||| || |||||||||||||||||    
T  2046426 tatcataattgctattgtaaataaaagatctattcatatctcttgtataaa 2046376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 751 - 901
Target Start/End: Complemental strand, 2050337 - 2050187
Alignment:
Q  751 aaacatacctgcatacaacaggaaaatcttgaggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctaca 850  Q
    ||||||||||||| ||  | ||||||||||  |||||||||||||||||||||||| |||| | | || ||||||||||||||||||| || |||||| |    
T  2050337 aaacatacctgcacactgcgggaaaatcttctggtttgggagtatcaggagccaagtaacacgcaaaactatccctccaattgagtgccggagagctata 2050238  T
Q  851 caaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtata 901  Q
     | ||||||||| || || |||| ||| |||| || |||||||||||||||    
T  2050237 aatatcaaaattactattataaacaaaggatctattcatatctcttgtata 2050187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 756 - 903
Target Start/End: Complemental strand, 2037149 - 2036999
Alignment:
Q  756 tacctgcatacaacaggaaaatcttgaggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctacaca 852  Q
    ||||||||||| |||||||  ||||  |||||  ||||||||||   ||||||| |||||| | ||||||| ||||||||||||||||||| |||| | |    
T  2037149 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 2037050  T
Q  853 aatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaa 903  Q
     |||| ||||||| ||||||||||| |||| || |||||||||||||||||    
T  2037049 tatcataattgctattgtaaataaaagatctattcatatctcttgtataaa 2036999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 751 - 901
Target Start/End: Complemental strand, 2054346 - 2054193
Alignment:
Q  751 aaacatacctgcatacaacaggaaaatcttgaggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagct 847  Q
    |||||||||||||||| |||||||| ||||  |||||| ||||||||||   |||||||  ||||  | || ||||| |||||||||||||||| |||||    
T  2054346 aaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagct 2054247  T
Q  848 acacaaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtata 901  Q
    | | | ||||| |||||| ||||||||||| ||||  |||||||||||||||||    
T  2054246 ataaatatcaacattgctattgtaaataaaggatctctgcatatctcttgtata 2054193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 751 - 862
Target Start/End: Complemental strand, 2033099 - 2032985
Alignment:
Q  751 aaacatacctgcatacaacaggaaaatcttgaggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagct 847  Q
    |||||||||||||||| |||||||| ||||| |||||| ||||||||||   ||||||| ||||  || || ||||||||||||||||||||||||||||    
T  2033099 aaacatacctgcataccacaggaaactcttgtggtttgagagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctggtgagct 2033000  T
Q  848 acacaaatcaaaatt 862  Q
    | | | |||||||||    
T  2032999 ataaatatcaaaatt 2032985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 771 - 882
Target Start/End: Complemental strand, 2057280 - 2057169
Alignment:
Q  771 ggaaaatcttgaggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctacacaaatcaaaattgcttttgt 870  Q
    ||||||||||  ||||| |||||||||||||||||| ||||| || || ||||||||||||||||||| || |||||| | | ||||| |||||| ||||    
T  2057280 ggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaactatccctccaattgagtgccggagagctataaatatcaacattgctattgt 2057181  T
Q  871 aaataaatgatc 882  Q
    ||| ||| ||||    
T  2057180 aaacaaaggatc 2057169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 7e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 751 - 845
Target Start/End: Original strand, 48908694 - 48908788
Alignment:
Q  751 aaacatacctgcatacaacaggaaaatcttgaggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgag 845  Q
    |||||||||||||||| | |||||||||||  |||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||||    
T  48908694 aaacatacctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctggtgag 48908788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 9934305 - 9934358
Alignment:
Q  241 aagtatctagtttgaatgtattttagttgagttttgtaaaggattcgataaaaa 294  Q
    ||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||    
T  9934305 aagtagctagtttgaatgtattttagttgagttttctaaaggtttccataaaaa 9934358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 377
Target Start/End: Original strand, 9934378 - 9934429
Alignment:
Q  326 cttgaaacgatggaaatccacccaaaccagacaactttgtaaccatgctata 377  Q
    |||||||| ||||||||||||| |||||||||||||  |||||| |||||||    
T  9934378 cttgaaaccatggaaatccaccaaaaccagacaactgcgtaaccgtgctata 9934429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 49683363 - 49683465
Alignment:
Q  183 tgatgaaaggaaatcatatatgatttttaggtcacttttagagttattttaaagttaaaagtatctagtttgaatgtattttagttgagttttgtaaagg 282  Q
    |||||| |||||||| |||||| |||||||  | |||||| ||| |||||| |||| || ||| | |||||   ||||||||||| ||||||||||||||    
T  49683363 tgatgacaggaaatcttatatggtttttagtccccttttaaagtcattttagagttcaa-gtagcaagtttatttgtattttagtagagttttgtaaagg 49683461  T
Q  283 attc 286  Q
    ||||    
T  49683462 attc 49683465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 85564 - 85490
Alignment:
Q  249 agtttgaatgtattttagttgagttttgtaaaggattcgataaaaaagtcattaaaggt---caaaaaggggaaat 321  Q
    ||||||| |||||||||||| |||||||||||||| || |  |||||||||| ||||||   ||||||||||||||    
T  85564 agtttgattgtattttagtttagttttgtaaaggactc-agtaaaaagtcatgaaaggtaaacaaaaaggggaaat 85490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 193 - 365
Target Start/End: Original strand, 12554660 - 12554830
Alignment:
Q  193 aaatcatatatgatttttaggtcacttttagagttattttaaagttaaaagtatctagtttgaatgtattttagttgagttttgtaaaggattcgataaa 292  Q
    |||||||||| | ||||| | ||  ||||||||| | |||||||| ||||||| ||||||| |||||||||| ||| |||||||||||| |||| ||| |    
T  12554660 aaatcatatagggtttttggttcctttttagagtcaatttaaagt-aaaagtagctagtttaaatgtatttttgttaagttttgtaaagaattcaataga 12554758  T
Q  293 aaagtcattaaaggtcaaaaaggggaaattatgcttgaaacgatggaaatccacccaaaccagacaactttgt 365  Q
    || ||||| ||||| ||| ||   |||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  12554759 aa-gtcatgaaaggacaagaacaagaaaatatgcttgaaacaatggaaatccacccaaatcagacaactttgt 12554830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 361
Target Start/End: Complemental strand, 15435265 - 15435095
Alignment:
Q  190 aggaaatcatatatgatttttaggtcacttttagagttattttaaagttaaaagtatctagtttgaatgtattttagttgagttttgtaaaggattcgat 289  Q
    ||||||||||||| |||| |||| ||  |||||  ||||||| | ||||||| ||| |||  |||| ||||||||||| |  ||||||||| ||||||||    
T  15435265 aggaaatcatataggattattagctcctttttacggttatttaagagttaaa-gtacctaagttgattgtattttagtcgctttttgtaaatgattcgat 15435167  T
Q  290 aaaaaagtcattaaaggtcaaaaaggggaaattatgcttgaaacgatggaaatccacccaaaccagacaact 361  Q
    ||||||||||| ||||| ||||||  ||||| ||  ||| |||  ||| ||||||||||||| || ||||||    
T  15435166 aaaaaagtcatgaaagggcaaaaacaggaaactagccttaaaattatgtaaatccacccaaatcaaacaact 15435095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 817 - 865
Target Start/End: Original strand, 28713345 - 28713393
Alignment:
Q  817 aagtatccctccaattgagtgctggtgagctacacaaatcaaaattgct 865  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  28713345 aagtatccctccaattaagtgctggtgatctatacaaatcaaaattgct 28713393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 777 - 871
Target Start/End: Original strand, 28786134 - 28786228
Alignment:
Q  777 tcttgaggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctacacaaatcaaaattgcttttgta 871  Q
    ||||| ||||| |||| || |||||||||||||||   | |||||||||||||||||||||||| ||| ||| | | || ||||||||| |||||    
T  28786134 tcttgtggtttaggagcattaggagccaaggaacacacaaaagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgta 28786228  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 817 - 862
Target Start/End: Original strand, 28736619 - 28736664
Alignment:
Q  817 aagtatccctccaattgagtgctggtgagctacacaaatcaaaatt 862  Q
    |||||||||||||||| ||||||||||| ||| |||||||||||||    
T  28736619 aagtatccctccaattaagtgctggtgaactatacaaatcaaaatt 28736664  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 817 - 862
Target Start/End: Original strand, 28743245 - 28743290
Alignment:
Q  817 aagtatccctccaattgagtgctggtgagctacacaaatcaaaatt 862  Q
    |||||||||||||||| || |||||||| ||| |||||||||||||    
T  28743245 aagtatccctccaattaagcgctggtgaactatacaaatcaaaatt 28743290  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 293
Target Start/End: Complemental strand, 30919686 - 30919586
Alignment:
Q  192 gaaatcatatatgatttttaggtcacttttagagttattttaaagttaaaagtatctagtttgaatgtattttagttgagttttgtaaaggattcgataa 291  Q
    ||||||||||| | ||||||| ||  ||||||  | |||||| ||||||| ||| |||||||||||||||||||||| | ||||||||||||||||| ||    
T  30919686 gaaatcatatagggtttttagctcctttttagtatcattttagagttaaa-gtagctagtttgaatgtattttagttaatttttgtaaaggattcgaaaa 30919588  T
Q  292 aa 293  Q
    ||    
T  30919587 aa 30919586  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 30927373 - 30927271
Alignment:
Q  190 aggaaatcatatatgatttttaggtcacttttagagttattttaaagttaaaagtatctagtttgaatgtattttagttgagttttgtaaaggattcgat 289  Q
    |||||||||||||   ||||||| ||  ||||||| | || ||| ||||||| ||| ||||||||||||| |||||||| |||||||||||||||| |||    
T  30927373 aggaaatcatatagagtttttagctcctttttagaatcatattagagttaaa-gtagctagtttgaatgttttttagttaagttttgtaaaggattggat 30927275  T
Q  290 aaaa 293  Q
    ||||    
T  30927274 aaaa 30927271  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 7784232 - 7784157
Alignment:
Q  218 ttttagagttattttaaagttaaaagtatctagtttgaatgtattttagttgagttttgtaaaggattcgataaaaa 294  Q
    ||||||||| || ||| ||||||| ||  ||||||| | |||||||||||||||||||||||| |||||||||||||    
T  7784232 ttttagagtcatattatagttaaa-gtggctagtttcattgtattttagttgagttttgtaaatgattcgataaaaa 7784157  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 20014040 - 20014083
Alignment:
Q  251 tttgaatgtattttagttgagttttgtaaaggattcgataaaaa 294  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||    
T  20014040 tttgaatgtattttaattgagttttctaaatgattcgataaaaa 20014083  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 376
Target Start/End: Original strand, 11602316 - 11602498
Alignment:
Q  192 gaaatcatatatgatttttaggtcacttttagagttattttaaagttaaaagtatctagtttgaatgtattttagttgagttttgtaaaggattcgataa 291  Q
    ||||||||||| |  |||||| ||  || ||||||||||||| ||||||| ||| | ||||||| |||||||| ||||||||||| ||| |||||||| |    
T  11602316 gaaatcatatagggcttttagctcctttgtagagttattttagagttaaa-gtagcgagtttgattgtatttttgttgagttttgcaaatgattcgat-a 11602413  T
Q  292 aaaagtcattaaaggtcaaaaaggggaaattatgcttgaaacgatggaaatccacccaaaccagacaactttgtaaccatgctat 376  Q
    |||| |||| ||||| ||||||  ||||| ||   ||| ||| || ||||||| || |||||| |||||| ||||| | ||||||    
T  11602414 aaaattcatgaaagggcaaaaaaaggaaaataccgttgcaaccatcgaaatccgcctaaaccatacaactatgtaatcgtgctat 11602498  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 367
Target Start/End: Original strand, 3952052 - 3952081
Alignment:
Q  338 gaaatccacccaaaccagacaactttgtaa 367  Q
    ||||||||||||||||||||||||||||||    
T  3952052 gaaatccacccaaaccagacaactttgtaa 3952081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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