View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700R-Insertion-4 (Length: 910)
Name: NF2700R-Insertion-4
Description: NF2700R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700R-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 455 - 906
Target Start/End: Complemental strand, 43062883 - 43062434
Alignment:
| Q |
455 |
ttgaggaattggctaatgagaacatcaatcaaattggtcgaaaataaaacagcactaccagttcaatccaaaatggacagtgcatttttctcagaaagtc |
554 |
Q |
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| T |
43062883 |
ttgaggaattggctaatgagaacatcaatcaaattggtcgaaaataaaacagcactaccagttcaatccaaaatggacagtgcatttttctcagaaagtc |
43062784 |
T |
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| Q |
555 |
cctatgaatctatgatcagtatcataacatgattcaattacgattccttcaaaaaggtaaactaataaatataggagtgaaagagagtccctatgatcag |
654 |
Q |
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| T |
43062783 |
cctatgaatctatgatcagtatcataacatgattcaattacgattccttcaaaaaggtaaactaataaatataggagtgaaagaaagtccctatgatcag |
43062684 |
T |
|
| Q |
655 |
tactcatccaaatttatcttcaagaccacatttcttttcaaattttgcaaagttggaagcatgtcacaaaaatgcttgtgagaaaagttaagtgataatc |
754 |
Q |
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| T |
43062683 |
tactcatccaaatttatcttcaagaccacatttcttttcaaattttgcaaagttggaagcatgtcacaaaaatgcttgtgagaaaagttaagtgataatc |
43062584 |
T |
|
| Q |
755 |
gagtgcgaaagacnnnnnnnnngggtagtgttaggaaggactataataacgcattaactactataactgatgtcatatttcataacggttacataacttc |
854 |
Q |
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| T |
43062583 |
aagtgcgaaagac--aaaaaaagggtagtgttaggaaggactataataacgcattaactactataactgatgtcatatttcataacggttacataacttc |
43062486 |
T |
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| Q |
855 |
ggctcagactcttttggataaatggtctttttcctagcataattttgatagt |
906 |
Q |
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| T |
43062485 |
ggctcagactcttttggataaatggtctttttcctagcaaaattttgatagt |
43062434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 427
Target Start/End: Complemental strand, 43063303 - 43062886
Alignment:
| Q |
9 |
agaggatcttctggtgtttcttatggaaaaggctgtggtcctcttaggatggtttccatgtggtttaccaaattgttgaatattgattcttatcaaatta |
108 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43063303 |
agaggatcttctggtgtttcttatggaaaaggttgtggtcctcttaggatggtttccatgtggtttaccaaattgttgaatattgattcttatcaaatta |
43063204 |
T |
|
| Q |
109 |
tctttcnnnnnnnaaactgttgtggtcaggatatcacatctatgaggacgattgggcgtgcagaactaatccatgactatatcgaggatctcacatcaac |
208 |
Q |
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| T |
43063203 |
tcttt-tttttttaaactgttgtgttcaggatatcacatctatgaggacgattgggcgtgcagaactaatccatgactatatcgaggatctcacatcaac |
43063105 |
T |
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| Q |
209 |
gaatgcttctttttgcaatgtgtataatacttgtaattccaattcttttgaactttggcactataggataagtcagtcatccttattataagattctcaa |
308 |
Q |
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| T |
43063104 |
gaatgcttctttttgcaatgtgtataatacttgtaattccaattcttttgaactttggcactataggataagtcagtcatccttattataagattctcaa |
43063005 |
T |
|
| Q |
309 |
acatgtatctaatatctttgcatgtgaacgttaacagaaggaatagtgaaaacatgatgactattggtccacaattcatatctgtgaaacatagcttcag |
408 |
Q |
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||||||||| ||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43063004 |
acatgtatccaatatctttgcatatctacattaacagaaggaatagtgaaaacatgatgattattggtccacaattcatatctgtgaaacatagcttcag |
43062905 |
T |
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| Q |
409 |
ataattcaccatgcggttt |
427 |
Q |
| |
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||||||||||||||||||| |
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| T |
43062904 |
ataattcaccatgcggttt |
43062886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 224 - 327
Target Start/End: Original strand, 43184082 - 43184178
Alignment:
| Q |
224 |
caatgtgtataatacttgtaattccaattcttttgaactttggcactataggataagtcagtcatccttattataagattctcaaacatgtatctaatat |
323 |
Q |
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| T |
43184082 |
caatgtgtctaatacttgtaattccaattcttttgaactttggcactata-------taggtcatccttattataagattctcaaacatgtatccaatat |
43184174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 453 - 541
Target Start/End: Original strand, 40179058 - 40179145
Alignment:
| Q |
453 |
ttttgaggaattggctaatgagaacatcaatcaaattggtcgaaaataaaacagcactaccagttcaatccaaaatggacagtgcattt |
541 |
Q |
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||||| ||||||||||||||||||||||||||||||||| | | ||||||| || |||||||||||||||||||||||| ||||||||| |
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| T |
40179058 |
ttttgtggaattggctaatgagaacatcaatcaaattggac-agaataaaataggactaccagttcaatccaaaatggaaagtgcattt |
40179145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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