View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700R-Insertion-5 (Length: 885)
Name: NF2700R-Insertion-5
Description: NF2700R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700R-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 344 - 633
Target Start/End: Complemental strand, 9580028 - 9579739
Alignment:
| Q |
344 |
gagagctatatggttgggaaggagacatgttgaacacaatgttggagggaaaggagtagggatatgatagcatgggaagaggagaattcgaatatgtatt |
443 |
Q |
| |
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| T |
9580028 |
gagagctatatggtcgggaaggagacatgttgaacacaatgttggagggaagggagtagggatatgatagcatgggaagaggataattcgaatatatatt |
9579929 |
T |
|
| Q |
444 |
ctgtcaagtcagattataatgttctaaacgtcgagagtgttggtgatgaggagtttccgatnnnnnnncttcggaataaaattattccgtcgaaggtgtc |
543 |
Q |
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| T |
9579928 |
ctgtcaagtcagcttataatgttctaaacggcgagagtgttggtgatgaggagtttccgataaaaaaacttcggaataaaattattctgtcgaaggtgtc |
9579829 |
T |
|
| Q |
544 |
cgtgtttgtatggcaggtaatgcaaaatcgtattccacccacgcacagtctatgtagaagaggaattataggtagggaggagttacattg |
633 |
Q |
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| T |
9579828 |
cgtgtttgtatggcaggtaatgcaaaatcgtattccacccaagcacagtccatgtagaagaggaattataggtagggatgagttacattg |
9579739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 38 - 342
Target Start/End: Complemental strand, 9580391 - 9580081
Alignment:
| Q |
38 |
tgtggaggttgagaacggagaaagatcgactgtggtacaaggttctcaaaaat--aagtatagggaagagatgaggaaaattaaatgtaacacaagagat |
135 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
9580391 |
tgtggaggttgagaacggagaaagatcgactgtggtacaaggttctcacaaaagcaagtatagggaagagatggggaaaattaaatgtaacacgtgagat |
9580292 |
T |
|
| Q |
136 |
tcgtctcttta-ttaagtaaga----gagagtggagtaagggatcgggaggtaatcataattggttttcaaactggtttagtagaaatatgggcggaggc |
230 |
Q |
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| T |
9580291 |
ccgtctctttaattaagagagattgagagagtggagtaagggattgggaggtaatcataattggttttcaaactggtttcgtagaaatatggggggaagc |
9580192 |
T |
|
| Q |
231 |
gagggcacatgtttttggagtgacgaataggttggtggagtcaccttaaaaaggaggttcaactgactttattccctatcattgtgtaaggaggctggag |
330 |
Q |
| |
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|||||||||| ||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
9580191 |
gagggcacatttttttggagcgacgaataggttggtggagtcacctt-aaaaggagtttcgactgactttattccctatcattgtgtaaggaggctagag |
9580093 |
T |
|
| Q |
331 |
tttcagatacga |
342 |
Q |
| |
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|||||||||||| |
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| T |
9580092 |
tttcagatacga |
9580081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 517 - 866
Target Start/End: Original strand, 32718392 - 32718732
Alignment:
| Q |
517 |
gaataaaattattccgtcgaaggtgtccgtgtttgtatggcaggtaatgcaaaatcgtattccacccacgcacagtctatgtagaagaggaattataggt |
616 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||| |
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| T |
32718392 |
gaataaaattattccgtcgaaggtgtttgtgtttgtatggcaggtaatgcaaaatcgtattccatccgaggacaatctatgtagaagaggaattataggt |
32718491 |
T |
|
| Q |
617 |
agggaggagttacattgcacataggaggatgtggagagatagagacttctaacagcttatgttttgcttgcccgactgtatcaaaaaagtatggttcgga |
716 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||| || |||||| |||||| || |
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| T |
32718492 |
agggaggagttacattg--cataggaggatgtggagagat--agacttccaaccacttattttttgcttgcccgactgtctc--aaaagtctggttcaga |
32718585 |
T |
|
| Q |
717 |
attgcgcattggctgggagtacaggtggtactgtttcacaatatgtgtaccatcaactttattacctttacagggctggttcgcgtgacgaaagatgcct |
816 |
Q |
| |
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|||||||| ||||| || |||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||| | | || |||||||| |
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| T |
32718586 |
attgcgcaatggcttggtgtacaggtgg---tgtttcacaatatgagtaccatccactttattacatttacagggctggttcccataacaaaagatgcag |
32718682 |
T |
|
| Q |
817 |
ttcagggacttgaagccatttggttcgcgagtatgtggagcatttggaag |
866 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||||||| ||||| |||| |
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|
| T |
32718683 |
ttcagggactggaagccatctggttcgcgagtatgtggaacatttcgaag |
32718732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 666 - 866
Target Start/End: Complemental strand, 9579733 - 9579540
Alignment:
| Q |
666 |
taacagcttatgttttgcttgcccgactgtatcaaaaaagtatggttcggaattgcgcattggctgggagtacaggtggtactgtttcacaatatgtgta |
765 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |
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| T |
9579733 |
taacagcttatgttttgcttgcccaactgtatcaaaaaagtatggttcggaattgcgcattggctgggagtacaagtgg---tgtttcaca--atgtgta |
9579639 |
T |
|
| Q |
766 |
ccatcaactttattacctttacagggctggttcgcgtgacgaaagatgcctttcagggacttgaagccatttggttcgcgagtatgtggagcatttggaa |
865 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9579638 |
ccatcaactttattacctttacagggctggtt--cgtgacgaaagatgcagttcaggaacttgaagccatttggttcacgagtatgtggagcatttggaa |
9579541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 457 - 770
Target Start/End: Complemental strand, 9585468 - 9585159
Alignment:
| Q |
457 |
ttataatgttctaaacgtcgagagtgttggtgatgaggagtttccgatnnnnnnn--cttcggaataaaattattccgtcgaaggtgtccgtgtttgtat |
554 |
Q |
| |
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||||||||||||||| | ||||||||||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
9585468 |
ttataatgttctaaatggcgagagtgttggtgatggggagtttccgatacaaaaatactttggaataaaattattatgtcgaaggtgtccgtgtttgtat |
9585369 |
T |
|
| Q |
555 |
ggcaggtaatgcaaaatcgtattccacccacgcacagtctatgtagaagaggaattataggtagggaggagttacattgcacataggaggatgtggagag |
654 |
Q |
| |
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|| |||||||||||||| |||||||| | | | ||| | ||||||||| || ||||||||||||| | |||||||||| ||||| ||||||| ||||| |
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|
| T |
9585368 |
ggtaggtaatgcaaaattgtattccatcaaaggacaatttatgtagaaaagaaattataggtaggtaagagttacatt-tgcatagaaggatgtagagag |
9585270 |
T |
|
| Q |
655 |
atagagacttctaacagcttatgttttgcttgcccgactgtatcaaaaaagtatggttcggaattgcgcattggctgggagtacaggtggtactgtttca |
754 |
Q |
| |
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| | | ||||||| | ||||| |||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
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| T |
9585269 |
acacatacttctagccacttattttttgcatgcccgactgta--agaaaagtatggttcggaattgtgcattggctgggagtacagatggta---tttca |
9585175 |
T |
|
| Q |
755 |
caatatgtgtaccatc |
770 |
Q |
| |
|
|| ||||||||||||| |
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| T |
9585174 |
cattatgtgtaccatc |
9585159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 40 - 328
Target Start/End: Complemental strand, 9585891 - 9585620
Alignment:
| Q |
40 |
tggaggttgagaacggagaaagatcgactgtggtacaaggttctcaaaaataagtatagggaagagatgaggaaaattaaatgtaacacaagagattcgt |
139 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| | |||||| ||||||||||||||||||| ||| | |||| |
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|
| T |
9585891 |
tggaggttgagaacatagaaagatcgactctggtacaaggttctcaaaagcaagtacggtgaagaggcagggaaaattaaatgtaacacgagatactcgt |
9585792 |
T |
|
| Q |
140 |
ctcttt-attaagtaagagagagtggagtaagggatcgggaggtaatcataattggttttcaaactggtttagtagaaatatgggcggaggcgagggcac |
238 |
Q |
| |
|
|||||| ||||| | |||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||| |||| ||| |
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|
| T |
9585791 |
ctctttggttaagagattgagagtggagtaggggatcgggagataatcataattggttttcaaac----------------cggggggaggtgaggacac |
9585708 |
T |
|
| Q |
239 |
atgtttttggagtgacgaataggttggtggagtcaccttaaaaaggaggttcaactgactttattccctatcattgtgtaaggaggctgg |
328 |
Q |
| |
|
| ||||||||| ||||||| |||||||||| ||| |||||||||||| || | | ||||||||||||||||||||||||||| |||| |
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|
| T |
9585707 |
a--tttttggagcgacgaatgggttggtggaaccacattaaaaaggaggatcgatcggctttattccctatcattgtgtaaggagcctgg |
9585620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 195 - 331
Target Start/End: Original strand, 32718100 - 32718236
Alignment:
| Q |
195 |
ttttcaaactggtttagtagaaatatgggcggaggcgagggcacatgtttttggagtgacgaataggttggtggagtcaccttaaaaaggagg-ttcaac |
293 |
Q |
| |
|
|||| |||| || |||||||||||||||| ||||| ||| ||| |||||||| ||| |||| |||||||| |||||||||||||||| || || | | |
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|
| T |
32718100 |
tttttaaaccgggttagtagaaatatggggagaggcaaggatacagttttttggactgatgaatgggttggtgcagtcaccttaaaaagggggtttgacc |
32718199 |
T |
|
| Q |
294 |
tgactttattccctatcattgtgtaaggaggctggagt |
331 |
Q |
| |
|
||| |||||||||| ||||| |||||||| ||| |||| |
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|
| T |
32718200 |
tga-tttattccctgtcattatgtaaggaagctagagt |
32718236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 9585562 - 9585515
Alignment:
| Q |
344 |
gagagctatatggttgggaaggagacatgttgaacacaatgttggagg |
391 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| ||||||| |
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|
| T |
9585562 |
gagagctatatggttgggaaggagacacgctgaacacaatattggagg |
9585515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 348 - 391
Target Start/End: Original strand, 32718297 - 32718340
Alignment:
| Q |
348 |
gctatatggttgggaaggagacatgttgaacacaatgttggagg |
391 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32718297 |
gctatatagttgggatggagacatgttgaacacaatgttggagg |
32718340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 828 - 866
Target Start/End: Complemental strand, 9585116 - 9585078
Alignment:
| Q |
828 |
gaagccatttggttcgcgagtatgtggagcatttggaag |
866 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9585116 |
gaagccatttggttcgcgagtatgtggagcattttgaag |
9585078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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